Array 1 520341-518245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEX010000005.1 Bifidobacterium pseudocatenulatum strain YIT12186 YIT12186_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 520340 29 96.6 33 ............................T ACGGGTCTGCGGAAATTCCGAATTAAAGGTCAT 520278 29 100.0 32 ............................. ACCAATGGACATGCGGGACGGATACAATCATG 520217 29 100.0 32 ............................. TCGCGTTGAGCATTTCACCCGTATCGATCGGC 520156 29 100.0 32 ............................. TACCTAGGCATTGACAATAGCACCACGGAAAA 520095 29 100.0 32 ............................. GCCACTTCCCCCCAGTTTCAGGTGCGCATTCC 520034 29 100.0 32 ............................. GAGCGGAAAAACCCTTTGCTTTGCCGGAATTT 519973 29 100.0 32 ............................. TACTCGACGGCGAATGAGACCATCCCAGAAGC 519912 29 100.0 32 ............................. GGACGTACAATTCGTGCAACTTCCAATACGTA 519851 29 100.0 32 ............................. ATTCCGGTGATGTCCGCGCTATCGTAGGCGTA 519790 29 100.0 32 ............................. CTCGAACACCTCATGCTGCCCGAACCAGTCGT 519729 29 100.0 32 ............................. AGCCGTGCGCCGTGGAGTAGGCGGATCTCGGG 519668 29 100.0 32 ............................. GAGTCAAGCAAATCGGGATTGGTCACATAAAT 519607 29 100.0 32 ............................. CGGCCGGTCGGAACCACATGCACCAGCTCTCC 519546 29 100.0 32 ............................. TGGGTAGGCAAAGGCCTGTTCTGCATCGATTG 519485 29 96.6 32 ............................T ACCGTGGCGAGACCCTGCACATCAAGCGCCGA 519424 29 100.0 32 ............................. AGCATTATGACACAATCCAAAATCATGCACGC 519363 29 100.0 32 ............................. AAGATGACAACGATACTCATACATTCCATCAT 519302 29 100.0 32 ............................. GCGGACGCGCTCATGCACCGGTTCTATCGTCT 519241 29 100.0 26 ............................. ACAAAAGAACACACACAACAGAACAG 519186 29 100.0 32 ............................. TGCAGGGCGACGACATGCTCCAGCTCATGGGA 519125 29 96.6 32 ............................T CGAATCGTTGACCGGTCAGGTCGATAACGCCA 519064 29 100.0 32 ............................. GGGGGATGCAGCCGATTCTACGCCGATGCGAG 519003 29 100.0 32 ............................. TCAACAAGGAGAAATCATGAGACATGACGAAC 518942 29 100.0 32 ............................. TGGTCGGTGACGGGGCATTCGACGAGCGGCGT 518881 29 100.0 32 ............................. TCCTTGACGTGGCGCAACGTGGTGGCGCTCAG 518820 29 100.0 32 ............................. GGATTCACCCTCAGATGCGACGCGACACTGAA 518759 29 100.0 32 ............................. CCTGGAACGTGTCCCACGAGCCCAGCCAGCCG 518698 29 100.0 32 ............................. CCAGTTGGGTGTGGCCCGGACGGGTCAGCATG 518637 29 100.0 32 ............................. GTGGATGTCCGCGGAAACGTCCCTAATTTGGT 518576 29 100.0 32 ............................. CATGGTTCGCCATTCTCGTCGGTCAGTGTGCG 518515 28 96.6 32 ....................-........ AAGGATACGCTGCCCATGATCGTCGGCACGAA 518455 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 518273 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 33 29 99.2 36 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAATGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //