Array 1 76589-76440 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCK01000010.1 Cronobacter sakazakii strain MOD1_AS-15 AS15A_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76588 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76528 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76467 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201050-203701 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCK01000018.1 Cronobacter sakazakii strain MOD1_AS-15 AS15A_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201050 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 201111 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 201172 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 201233 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 201294 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 201355 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 201416 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 201477 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 201538 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 201599 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 201660 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 201721 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 201782 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 201843 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 201904 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 201965 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 202026 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 202087 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 202148 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 202209 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 202270 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 202331 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 202392 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 202453 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 202514 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 202575 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 202636 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 202697 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 202758 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 202819 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 202880 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 202941 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 203002 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 203063 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 203124 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 203185 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 203246 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 203307 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 203368 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 203429 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 203490 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 203551 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 203612 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 203673 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230138-231204 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCK01000018.1 Cronobacter sakazakii strain MOD1_AS-15 AS15A_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230138 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 230199 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 230260 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 230321 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 230382 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 230443 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 230504 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 230565 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 230626 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 230687 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 230748 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 230809 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 230870 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 230931 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 230992 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 231054 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 231115 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 231176 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //