Array 1 32867-32166 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXQ01000049.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU09-4-54E-3 NODE_49_length_35050_cov_15.1601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32866 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 32805 29 100.0 32 ............................. GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA 32744 29 100.0 32 ............................. GTACGGAAATTTGTGTCAGATATTGCCGGGAA 32683 29 100.0 32 ............................. TGCCCACAGTTCGTCGTGAATTGCGCAGGATA 32622 29 100.0 32 ............................. GTTCTCAATAAATTTTCCCGGCTGCCGGATCT 32561 29 100.0 32 ............................. ATTGGGACCATTCCAATGGTCAGTTTCACGGA 32500 29 100.0 32 ............................. AAACCAGAATTGCTGAAGTAAATTGCAAAAGA 32439 29 100.0 32 ............................. ATATCGAACGGGTTACGGCTGTCGGTGTAACT 32378 29 96.6 32 ............T................ ATATTTTGGCAACTCGTCGTACATTATCGCCA 32317 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 32256 29 100.0 32 ............................. TCTTTGTGGTAAATATGGAATCGATTAACCCC 32195 29 100.0 0 ............................. | A [32168] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGCAGCGTAGATATTGGCTGGCTACATAGTGAAGAGGCGTGTCTTGAACATATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCGGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCTAGTGCTGCGCATTCTTGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79-1388 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXQ01000126.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU09-4-54E-3 NODE_126_length_8664_cov_13.1202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79 29 100.0 32 ............................. CCTTCGTTATTTACGACATTAACATTAACCGT 140 29 100.0 32 ............................. CTTAATGCTTTTTCGTCCGCCCATAGAAATAA 201 29 96.6 33 ...................A......... GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC 263 29 96.6 32 ............................A GCAGATTGGTATCTGGTACGACGACTGCCGCC 324 29 100.0 32 ............................. ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA 385 29 100.0 32 ............................. TCCACTGTACCGCCGACAGGACTTTTTAACGT 446 29 100.0 32 ............................. CGCAGGCGCTGGACGCGCTGCACAGACAGTCC 507 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 568 29 100.0 32 ............................. CGAATATGTTGATCGGGATTCTGGCCGCACTG 629 29 100.0 32 ............................. CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT 690 29 100.0 32 ............................. GCGCTGACCATGATTGCAGTCAGGGTCGGCAT 751 29 100.0 32 ............................. GGGGAATGATGAAACGAATTAGTAAAAACAAA 812 29 100.0 32 ............................. AAATGGCATAGCCACCCCAGACAGTGGCTTCT 873 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 934 29 100.0 32 ............................. CCAGTAACGCTGGCGTGATAATTTTGGTCGCC 995 29 100.0 32 ............................. CAATACGACTGGACTGGATTTGATTCATTAAC 1056 29 100.0 32 ............................. CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG 1117 29 100.0 32 ............................. GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT 1178 29 100.0 32 ............................. AAACACCAACATTACGGCACGCAAGAGGTTAT 1239 29 96.6 32 ........T.................... GTTGGAGGGCGGTTCTGATGGCGAAACTTATC 1300 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 1361 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //