Array 1 29084-27463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIO01000117.1 Lacticaseibacillus rhamnosus strain Lrh16 Lrh16_contig00124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29083 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 29017 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 28951 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 28885 36 100.0 29 .................................... GATTGTTCGGTTGCTTCTGTGATGCCACC 28820 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 28754 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 28688 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 28622 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 28556 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 28490 36 100.0 29 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCC 28425 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 28359 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 28293 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 28227 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 28161 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 28095 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 28029 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 27963 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 27897 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 27831 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 27765 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 27699 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 27633 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 27567 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 27501 36 83.3 0 .......................AA.A....G..AA | T,CA [27466,27472] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //