Array 1 46743-38187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPJY01000014.1 Thioalbus denitrificans strain DSM 26407 Ga0244567_114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46742 28 100.0 32 ............................ GCCAGCGCCGCCAAGTCCGCCGGCGGGACCAA 46682 28 100.0 32 ............................ AAAGCAGGATCGGCGCGCCGGCGCTGTGTGCC 46622 28 100.0 32 ............................ AGCGGAACCACCGCCGCGGACAGCGGCGGCAA 46562 28 100.0 33 ............................ GGGCGATCCCGGCCGAACATCCGCACCCGGGGC 46501 28 100.0 32 ............................ ATCGTCAGCGCATCCGCAGTCCGTCGCATGGT 46441 28 100.0 32 ............................ TGGGGCGCCCGCGTTTCCCGCCGGATGCGAAA 46381 28 100.0 32 ............................ CTGGCCCGCTGGCGGTCGAGCTGGCGGCAGGC 46321 28 100.0 32 ............................ TGCGTGCAACCGATGGCCCGCACCGGGGCAGG 46261 28 100.0 32 ............................ TGGTTCGCCGCGGTCGGGTTCGCGCCGAACAC 46201 28 100.0 32 ............................ GCTGTCCCGCTCAGCATGTGATGCTGTTTCCC 46141 28 100.0 32 ............................ TCGGTGTCCAGCACATACACCCCGAGCCGCTC 46081 28 100.0 33 ............................ TCGCGCAGGAGCTGCGCCTCCTCGAACAGCCAC 46020 28 100.0 32 ............................ TTGCGGGCATCCTTGGCATAAGGGCCCAGTTT 45960 28 100.0 32 ............................ TCGTGCACGTGCAACCCAGGGAACCACCCCTC 45900 28 100.0 32 ............................ TCACCGGCGCGGCGCTGGCGGCACCGCCCACC 45840 28 100.0 32 ............................ ACCCAGGGCATGAGCCGCGATTCCATCGCCGC 45780 28 100.0 32 ............................ ACCCGGTCGATGGCGCCCCGGTTGACCCGCGT 45720 28 100.0 32 ............................ CGTCTCTGCTCCCGAGCACTCGGCACCTTGGT 45660 28 100.0 32 ............................ GGTCTGCGGACTACCAGGACCTGCGGGTCAGC 45600 28 100.0 33 ............................ CATGTGATGGACTCACCACAGCGCACCCCAAAG 45539 28 100.0 32 ............................ TGTGCGCAGAACATCGGTACATGTATGAGACC 45479 28 100.0 32 ............................ GGAACCGGCCCGGGCGGAATCCGAGAAACCTA 45419 28 100.0 32 ............................ TCGACGCGCCCCCCGTCTCTGCTCCCGAGCAC 45359 28 100.0 32 ............................ ATGTAGCGCAGGTAGTGGCGCTCCCCGAGCTC 45299 28 100.0 32 ............................ ATAGATGGACAGCTCGCGGGCCTTGCGCACCA 45239 28 100.0 32 ............................ ACACCGAGAGCGGGATCGCTGGTAATACGTAC 45179 28 100.0 32 ............................ AGCAGACCGGCGGCGAGATCCTGGACGCTGCA 45119 28 100.0 32 ............................ TTCCAGGGGTGCCGGACCTTCCGTCCTCGACG 45059 28 100.0 33 ............................ CGGACGCGGGTCAACCGGGGCGCCATCGACCGG 44998 28 100.0 32 ............................ TGGAGAACATGCCCAAGGTGAAAGCCGCCTTC 44938 28 100.0 32 ............................ AAGCGCGGCCCGGGCTTCGGCCACGCTCGAGA 44878 28 100.0 32 ............................ GCCGAGAGCGTCACGCTCGACTACCGCGCGCA 44818 28 100.0 32 ............................ TTATTCGGTCGTGAATGTGTATGGCACGGGTT 44758 28 100.0 32 ............................ TTTAGCACTTCCTCGCCACGGCCGGAGCGGAT 44698 28 100.0 32 ............................ AACAGTCCCGGCCAGCGGCCGCCCCGGATGAA 44638 28 100.0 32 ............................ ACCTCGGCCACATGCGGGCGGGCGTAGGGGTA 44578 28 100.0 32 ............................ AGGGAGGCAAAGTGGCAGGCGGCGGGCGGAGA 44518 28 100.0 32 ............................ GCCGGGAGTGCGATGAGGTACTCGATTTCGCC 44458 28 100.0 32 ............................ GCCGGTGGCTACCGGGCCGGCCGCGCCGGACA 44398 28 100.0 32 ............................ GGGAGCGGGCGGCCGCCGAGGCGGCCGTGGAG 44338 28 100.0 32 ............................ TCCACTCCCGCCCCAGCTCCAGGGGTCCGCCC 44278 28 100.0 32 ............................ TGGCGCACCCGGGCCCACTGGATGGCCGACCG 44218 28 100.0 32 ............................ GGGCGAGTAGGGCGCGGCCTCGCCCAGCTCGT 44158 28 100.0 32 ............................ GCATGCGCGAGGCCGGCGAGAAGCTGCGCCAG 44098 28 100.0 32 ............................ AGAACCGCCAGGCGTCGTAGTCGAGCCCTGTC 44038 28 100.0 32 ............................ TGCTCGATGGCGCGCTCAACCGATGCCAGCTT 43978 28 100.0 32 ............................ ACAACGAGCACGTCCTCGGGCGGCTGCTCCAG 43918 28 100.0 32 ............................ ACGGCGGCGCGGTGACGCTCCCGGCAGTCGGT 43858 28 100.0 32 ............................ CCCTCGGCAAACTCCGATACGACAGAATCATG 43798 28 100.0 32 ............................ AGCGACGGCGGGCACGGCGGTCCGAACCAGAG 43738 28 100.0 32 ............................ ACCATCACCGCCGCTGTGGATTTCGCCGGTGT 43678 28 100.0 32 ............................ GTAGGGGGAGGACCCCTTGCGCCGGGGAGCAC 43618 28 100.0 32 ............................ AGCAGACCCTCGAACAGCTGGCGGCCTACGGC 43558 28 100.0 32 ............................ AGGACACGCTGGAGCGCGTAGCGGCCGCACTC 43498 28 100.0 32 ............................ TGGGCTCTACGCCTGGGGCGACGAGACCGGAG 43438 28 100.0 32 ............................ AAACTCACCGCCCTGAGTACGTCGAATGAAAC 43378 28 100.0 33 ............................ ACTGGTCGGCTGAGTGGTAACGATGAACTTGAA 43317 28 100.0 32 ............................ TTACGGGGCTATGGCGATACGCGTTAGGGTCC 43257 28 100.0 32 ............................ GCACATCGGGACATACTGCCGCCCCAGGCGGG 43197 28 100.0 32 ............................ TTGGCGGCGACGCGCTCGCTCTCCTCGTAGTC 43137 28 100.0 32 ............................ GATGCCGAGACTGCAGCGACCGCAGCCGAGTC 43077 28 100.0 32 ............................ TTGACGAACTCGCCGCCCACGGTTGAAGCCAA 43017 28 100.0 32 ............................ ACCAGTACCACGATCTACTGGAACAAGGGCAG 42957 28 100.0 32 ............................ GTCCCGAAATTCATTGCTCGGGATGGAGATAA 42897 28 100.0 32 ............................ AGACGGGCGCGGTTGGGTGAAAAACCGTCTCC 42837 28 100.0 32 ............................ AGCAAGGAGTGTGAACCATGAACATCTACGTC 42777 28 100.0 32 ............................ TGTGGGACTGGGAGGCCGGCGCACCGTTCCGG 42717 28 100.0 32 ............................ TTGGCCACCGCGGCATTTACAGCGGCCACGTA 42657 28 100.0 32 ............................ GATGCTCCAGCACCGCCCTGGTTCCTGGACCC 42597 28 100.0 33 ............................ CTCTGGCGTCACATCCTCCAGGCGGGCCCGGGC 42536 28 100.0 32 ............................ AACCCCCCGGACTCATTCCATACCACGCCCTG 42476 28 100.0 32 ............................ TGCAGGTGGCGGTGAAGGCGGCAGAACGGGAG 42416 28 100.0 32 ............................ TCAGCGCGTCCGGTGGTGCGGTATTGGAGATC 42356 28 100.0 32 ............................ TGTTTGATCAGGTACGTGTGTCCGGTCACTTC 42296 28 100.0 32 ............................ ACGGCGTGCTCAGTGAGTCCGCTGCCGCTGCC 42236 28 100.0 32 ............................ ACGACCGGCAACGCTAATGTCCTGGCAAGGGA 42176 28 100.0 32 ............................ AAGCGGGATGATGTCGTTGGGCTGCAGGCTCA 42116 28 100.0 32 ............................ ACAAAACGGACCTCTCCGAAATCGGAGACATA 42056 28 100.0 32 ............................ AATGAGGACACCATCAACTTCGTGGCAAGCAC 41996 28 100.0 32 ............................ ATTACGGTTAACAGCCAGTCGGCCAAGCCGGG 41936 28 100.0 32 ............................ TGCTGATATAGCCATATACGGAGGCGCGGCAG 41876 28 100.0 32 ............................ ATATGGGGCACCTGCATCATGTGGACGTGAAA 41816 28 100.0 32 ............................ GTTACCGATGCCACTGGCGTGGGCGCGAGCCA 41756 28 100.0 32 ............................ AGCCGGATCGGGTTGCCTTTGTCGCCCACGTA 41696 28 100.0 32 ............................ ACCTGGATGCTCTTCGAGCCCTGAACGAACTC 41636 28 100.0 32 ............................ AGTCGCACGTGCTGTTTGTTCTCGCGCACGAG 41576 28 100.0 32 ............................ ATCCAGCGCCTCGAGCAAAACGGCGGCTATAC 41516 28 100.0 32 ............................ TCGATGACATTCGCGCTGGAGTCCGTCACCAC 41456 28 100.0 32 ............................ ACGCGCACCGCGCGCTCCACCTTGGCCCATGC 41396 28 100.0 32 ............................ ACAACAACCACCACAACGACAACGGAAAAGAA 41336 28 100.0 32 ............................ ATCCCGGTGCTGCGCCTTCAGGCGGAGCCGGC 41276 28 100.0 32 ............................ GCCTGAAGCTGTTCCCAGTAGCCCGTGCCGAT 41216 28 100.0 32 ............................ CACCCGTGGCGCGCTGCTAGCCTCTCTCACTG 41156 28 100.0 32 ............................ GTCTCGCGGATCTGCGCCGGGTCGCTGCCCTC 41096 28 100.0 33 ............................ ACAGAGCGCACCGAAGGGTGCTTGCGTCTACAT 41035 28 100.0 33 ............................ CGATCTGCTGTGGCACTTCGACCCGCGCAGCAA 40974 28 100.0 32 ............................ GGCGACGCCAAGTGCCAGCTACCAGACAATCA 40914 28 100.0 32 ............................ ATGCTGACATCGTGCTCCAGCCCCCAGCTGAC 40854 28 100.0 32 ............................ ATCAGGTGCCCGAAGAAGTGCTCAAGCACATC 40794 28 100.0 32 ............................ AGGCTGAAATCGACCCGGACAGTCCAATCTGC 40734 28 100.0 32 ............................ GGCCGGCGCGGTGGTGGATGCCAATGGTGACG 40674 28 100.0 32 ............................ GGCCGGCGCGGTGGTGGATGCCAATGGTGACG 40614 28 100.0 32 ............................ GGCGGGCTGCTGTGCTGGCCGGACGCTACCCC 40554 28 100.0 32 ............................ AGCTGGCGGAAAAACTCTGACCTGTGAGGTAC 40494 28 100.0 32 ............................ CGGGCGAGGCCGACGAGGTAGGGCAAGGCCCT 40434 28 100.0 32 ............................ ATCAAGACGAGCGTTGTGTGTCGTCGAGTCAC 40374 28 100.0 32 ............................ TACTCGGATGCTTGGCGTGGCTGGGTGGGTAA 40314 28 100.0 33 ............................ GAGCGGCCACCCCATGAGCCACTCGACCCACTT 40253 28 100.0 32 ............................ AAGCGGCGCTCGCGTGGATGATCTTGGGAGGG 40193 28 100.0 32 ............................ TACGTGCCCGATGGTGGTGCCTTGCGTGGCGT 40133 28 96.4 32 .............T.............. AGCCGGGCCGGTACAACGGCCGGCTACATCTA 40073 28 100.0 32 ............................ GTCTGGCCGATGCAGACGGAGCAGTGTGTCAT 40013 28 100.0 32 ............................ GGGAGAGGTCGGAGTTGGGCGAGTGGGTTGGC 39953 28 100.0 32 ............................ AGGATGAGGACAGGGACATCCTCACCTACACC 39893 28 100.0 32 ............................ GCCACAGGTAGTTGTGGCCCGTGAGCGGCCGC 39833 28 100.0 32 ............................ TCTGACCAACGGGCGCCAGTGGATAGGCAAAC 39773 28 100.0 32 ............................ TGGGCCACCGTCTGCTCGACGGGAGCCAAAGC 39713 28 100.0 32 ............................ AGCACCAGTTCCAGGCGCAGCTCCTCGGCCAC 39653 28 100.0 32 ............................ GCGACACCTGCCCGGCGATTGTTTCGCCCTTC 39593 28 100.0 33 ............................ ATCTACCCCGAGCAACTCGGCACCGACCCTGCC 39532 28 100.0 32 ............................ AATTCGCTGACGTCATCGCCTGGACGGCGGTG 39472 28 100.0 32 ............................ TGAGTGTCGCGGAGAATGGGCGCATGCAACGC 39412 28 100.0 32 ............................ CGGCCGCCAGGGCCGCGTGATGAGCGCCCGCC 39352 28 100.0 32 ............................ ACACAGCAACCGTGCGCCCCGTCTCCGGGTTC 39292 28 100.0 32 ............................ TGGGCATGACGGACAAGCCGGAGGCCTGGGAG 39232 28 100.0 32 ............................ CTCAGCAGAATTGCGTCACGGGGCAGCCGGAC 39172 28 100.0 32 ............................ AGTCCGGCGCTGGCCAATCTGTCAGCGCATTA 39112 28 100.0 32 ............................ ATCGACACGGTGATTCGTCGGGCGCGCGTTCT 39052 28 100.0 32 ............................ ATCGCTCGATGGGCTTATGACTGGAACACGAA 38992 28 100.0 32 ............................ CTGGAGGCGACCGGCGACGCGATGGCTATCCG 38932 28 100.0 32 ............................ GGCCGGCGACCTAGACCCCATCGGCTGGCTGG 38872 28 100.0 32 ............................ ACCCGGGCAGCCGGTAGCACGTGGTTGTACAC 38812 28 100.0 32 ............................ AACGGCAAGGCCAGTCTCGGCGCCGTGGACAC 38752 28 100.0 32 ............................ ACGGAACCGGATACGCGCGAGTATTCGCCGTC 38692 28 100.0 32 ............................ ACCACCACGAACTTGCCCCAGGTATCGGACAT 38632 28 100.0 32 ............................ TGGTCGTAGGACTCCGGTACGCCCTTCTTGAT 38572 28 100.0 32 ............................ ATCGGCAACAGCGCCGAGCTGCGCGACTACGC 38512 28 100.0 32 ............................ GAGCTGCACGCCGACTGGCTGCGCCGCATCAA 38452 28 100.0 32 ............................ TCGTCCCAGCTGGCGCCGATGTCGCCGTAGAC 38392 28 100.0 32 ............................ ACACGGAGAACCCGGTACACTGGAGGAAATCT 38332 28 100.0 32 ............................ TGACGCTGCAGAGCCCCGACACCGCCGAGGTG 38272 28 100.0 32 ............................ ATTGCCGAGTCCTGCGCGTTCGTGGCGCTGGA 38212 26 85.7 0 G...............--...C...... | ========== ====== ====== ====== ============================ ================================= ================== 143 28 99.9 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : ACCTCGAGAGATTGATGGCGGAGAATTGGCTGGTCGGAATGCAGGACCACCTCGTACATCCGCAGTTATCCATCGTGCCAAACAATGTTCAGCATTGCCGAATACGGCGCGTGCAGCCGAAGTCCAACGCCGAACGTTTGCGACGTCGCTATCTCAAACGCCATCCCCAACTCACTAATCAAGACGTCGAGGCAAAGCTGCCCGATTCCATAGAGACGCGGATAAAACTTCCATTTCTCCGCTTGAAGAGCCAGAGCAATGGGCATTCGTTCTGCCTGTTTCTGGAACATCTGCCCCCCCAGGAACAGCCGGTCGATGGAGCATTCAACACGTATGGCTTGAGTTCAGAGGCAACGATCCCCTGGTTCTGACCCTTTCCCTGCACTCAGAATCAACGTATTGAAGATCAAATAGTTACGCCCACACCCTGAAAAAGGGTGTGGGCGCTTCTTTTTGAAGCAAGCTCTTTAACAACAAGGCATTAGAGATCATAGCCAATA # Right flank : CTTACAGAAAATCATCAGAACCCTGCAGATTCTGATCAATAAACGTAAATCAACGTCAATCTGTGGTTGGCGGCCTTGTGTCTTTCTTCGTGTCCTTCGTGGTGAGTGATTTTCTCGTGGTGAGCCTTTTTCACGAATCGGCCAGGTTGTCCCGTGCCAGCACCGTTTCCACCAGGTCGCCCTCCGCGGCGCCGGGGGTGCGGACGCGGATGTAGTTGGTGGTCAGGCCGGTTTCGTTGCGCTCGGTCAGCACGGTGTGCCGGCGTCCCAGCTGGCTGTCGAGGAACTCCCGGCGGGTCGCCTGGCCCAGGGCGCGCAGCTCGGCCGCGCGGCGCTTGCGCTCAGCGGGGTCGAGCCCGTCGGGCAACGCCGCCGCCGGGGTGCCTTCGCGGGGCGAGAAGGGGAAGACATGCAGCTTGGCGAAGCCCAGCCGCTCCACCAGGCCCGCGGTCGCGGCGAACTCCGCCCCGCTCTCGCCAGGAAAGCCGACGATGAAATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //