Array 1 204698-203221 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBP01000001.1 Salmonella enterica strain BCW_2541 NODE_1_length_584036_cov_3.48164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 204697 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 204636 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 204574 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 204513 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 204452 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 204391 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 204330 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 204269 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 204208 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 204147 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 204086 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 204025 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 203964 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 203902 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 203799 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 203738 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 203677 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 203616 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 203555 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 203494 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 203433 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 203372 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 203311 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 203250 29 96.6 0 A............................ | A [203223] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 222384-220830 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBP01000001.1 Salmonella enterica strain BCW_2541 NODE_1_length_584036_cov_3.48164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 222383 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 222322 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 222261 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 222200 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 222139 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 222078 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 222017 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 221956 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 221895 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 221834 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 221773 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 221712 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 221651 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 221590 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 221529 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 221468 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 221407 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 221345 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 221284 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 221223 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 221162 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221101 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221040 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 220979 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 220918 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 220857 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //