Array 1 41-679 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000072.1 Streptomyces sp. SID4936 SID4936.c77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. ATCGATTCGGAGAGCGAGTACGCCCACTTGGT 102 29 100.0 32 ............................. AGCTCAAGCGTGCTGATGCCCGTCGCAGGGAG 163 29 100.0 32 ............................. CCCAGGAAGGAACCGAACATGCCGCTCTCCCG 224 29 100.0 32 ............................. AGGGTGAAGTGGACATCGCCCCCGACCTGGTC 285 29 100.0 32 ............................. AACCTCGCCCCGGGGCAGAAGTCGGTGCAGAC 346 29 96.6 32 ...T......................... CCGCACAACTGGCTGCGCGTGCTCGAAGTCGC 407 29 100.0 32 ............................. TTCTGGACTGACGATCGAAGAGGCGGGAACCG 468 29 96.6 32 .....................G....... ATGATGATGTGGCCCTCGGCCGACAGCTCGAC 529 29 82.8 32 ...A.....A..T.C......A....... TTGCAGGACCAGCGCACCAAGGGTGCGTACGG 590 28 89.7 32 ..A........-..C.............. TTCACCGGACCCGGCTTGGTCACCAAACACTG A [604] 651 29 82.8 0 T..T......TA.........A....... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.3 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : TTGGTCCCGAGCCTGCGGACCAAGCCCGTTGGATGCGGTCG # Right flank : CCAGACCGAGCTTCTGCGCGACCTCATGAATCCGTGATCCCCGATCCCCGCACCCGCGGGGCAATCCCCGCGCAGAGGTCAAGGCCGGGCTCCAGGGCCGAAGGCTGTCCGGAGGCGCCGCGTGTACGCCGGAGGCGCCGTGGATACCGCCGTGGCCATACAACTGTGGCCCCGCACGACGGTCGTCGTGCGGGGCCACAGCTCACCACCCACGCTCAGGTCGGGGGAAGCGGCATCGGGGGGACAAGCCGCTTCCCCCGGTGAGAACAGGGCCCGCCGGCCCTCGTCGCGGTCGGGGGTGGACTGCGGCGAGGACCCCACAGTGGGGCCCGTTCCGAGCCCCTCGGATTCCTGCCTCATCCGCTGGGCTCAGCATCCATCCTGCTCCCTCGCAGCGGCCGTACGGACGGGCGAAGGGCCCCGATCGTCGGGCCCTTGGTCCTTAAAAGCCGTGTGAGTGGTCGTCGCAATCCTCCGAGGGGTGCGGCCATACGTGCGGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 436-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000109.1 Streptomyces sp. SID4936 SID4936.c120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 435 29 100.0 32 ............................. GAGTCCAAGCCCGGCTACCTCGCCGAGACCCT 374 29 100.0 32 ............................. CACGAGGTGGAGGCGCTGACCGGGCCGTCCTC 313 29 100.0 32 ............................. GCCGCCGTCGACATCAAGGACGACGCCGCCAG 252 29 100.0 32 ............................. GACTGGACGGCGAGCTGAACGGCCCGGTTGTA 191 29 100.0 32 ............................. CGCCAGGCCGGTGAATGGCACGACCGCCTTCA 130 29 100.0 32 ............................. GTCTCCAGGTACATGCTTCAGCTGGAGGTCAT 69 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : TCATCGTCCTCACCAACTGCCCCGTCGGCCTGCGGGGGTTCCTCACGCGCTGGCTGCTGGAGATCTCGCCCGGGGTCTTCCTGGGCGCACCCTCGGCCCGCATCCGCGAGGTCCTGTGGAACGAGGTCCGCCAATACGCGGGCCAGGGCCGGGCGTTGCTCGCCTACCAGACGAACAACGAACAGGGCTACACCTTCGAGACCCACGACCACGCCTGGCACCCGACCGACCACGAGGGCCTCACCCTGATCCACCGCCCGAACCCGGGTGCGCCACGCGCCGCGCGGAAATCGCCCGACGTTCCTCGCCAGGGCTGGAGCAAGGCAGCGAAGCGGAGAAGATTCGGCAGCAAGTAGCGCGGAGCGGAGCGATGACGGGGGCGGCGGAGCGGGACGACCGTCTTCGTTCATCCGGAATGAGGGAAAAGGGTGGCTTTGCCGGTATCGAAGGAAGTAAGTAAAAACAGCCTCCTGCCCGCATAAACCCCCAGGTCAGTTCCT # Right flank : AAGAAGCCCGGCCGGGGCGTCTTCTCCCGCCGGGTGGTCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 244-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000111.1 Streptomyces sp. SID4936 SID4936.c122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243 29 100.0 32 ............................. TTCTGCTCCCGGCCACGCTGCCAGGCATACGG 182 29 100.0 32 ............................. GTCACCCAGTCTGCAGCACGCATGGGCATGCC 121 29 100.0 32 ............................. CTGGCGATCCTGAAGGACTCAGGAGCCAAGGT 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : CGGGTGGTCTACGGCGCCCGCGACGAGAAGGCGGGCGCGGCGGGCTCCCTCTGGGACCTCGTACGCGACCGCCGCCTCAACCACCGCCCCGAGGTGATCCAGGGCGTACTGGAAGACGAGTGCGCGAGCCTCCTGACATCCTTCTTCCGCACCCCCTGAGAACCGATTTCTGTCCACGGCCCGCCATGGTCTAAGCTCTCTCTCGGTAGCGTGTCCGAGCGGCCGAAGGAGCTCGCCTCGAAAGCGAGTGTGGGGAAACTCACCGAGGGTTCAAATCCCTCCGCTACCGCCATCGACGCCCTCCCGACCAGCGGAAACGCAGGACGGGAGGGCGTTCGCGCATCACCGGGCCTGCCGCGCCGAAGCCGATGTCGGCTCTTGTTCGTTCCCGCGCGGGGCTGAGGCACGACTGACCGAGTCGAGAGTGTGACGAAATGCCCGAATCTCAAGAAGTAAGTAAAATCAGGCTCCCCCTGCCATAAACCAGCAGGTCAGGAACT # Right flank : CCAGACAGGTCAGAAGACCAATGCTGAGGATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 559-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000112.1 Streptomyces sp. SID4936 SID4936.c123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 558 29 100.0 32 ............................. AGCCGTGCATCCTTGCCGCTGAACTTGCGCTT 497 29 100.0 32 ............................. GGATACGACGGCATCAGCCTGGCCGGGCGGTG 436 29 100.0 32 ............................. AGTCCGGCCGGGCGTCGTGGCTGCTGGGCGAC 375 29 100.0 32 ............................. TCCGCCGGTCTCGTCCCTTTCTCATTGGCCGC 314 29 96.6 32 ...................A......... GCCCGCTGCGGGATGTACACCACGACGTCCGG 253 29 100.0 32 ............................. GCCACGTCGAGCACGTCCTTGATACGTCCCAT 192 29 100.0 72 ............................. GGCACCGCGACCGGCCCGTTCTCCACCGTGCTGTGGTCCCCGCGCAGGCCGGTGAATGGCACGACCGCCTCG 91 29 100.0 32 ............................. TCCTTGAGCGTCAGCTGTGTGTTGTACATGCG 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================== ================== 9 29 99.6 37 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : TCGGCGTCGGTGTCGACAATCC # Right flank : CC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000114.1 Streptomyces sp. SID4936 SID4936.c125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. GTCGGAAACGTTTCGACCGAAACGTTTCCAGA 63 29 100.0 32 ............................. TCCCAGGTCTCGCCGCAGTTGCCGCAGTGGGC 124 29 100.0 32 ............................. GCTGCCGCAGTGCGGGCAGCGGACCATGAGGG 185 29 100.0 32 ............................. TACATCGTGTCCGTGGAGTTCGTGAACGCCAA 246 29 100.0 32 ............................. AAGGCCGCGGTCGTGCCCGAAGGGACGATGAA 307 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : GG # Right flank : TCGACGACATCTCGGATCGAGTACGCGAGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 44-503 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000113.1 Streptomyces sp. SID4936 SID4936.c124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44 29 96.6 32 ............................T CTCGGCGGGACCGCGTTCAAGCTCAAGGCCGG 105 29 100.0 32 ............................. CAGGTCGGATCGCTGTTCCTGGAGGAGTCGGC 166 29 96.6 32 ....................C........ CCGTTCCGCACCAGGGCCTCAAAGAGGCCGCC A [186] 228 29 100.0 32 ............................. CAGGCGGCAATGAGGTCGAGCAGGGTGGTGAG G [249] 290 29 100.0 32 ............................. GCGGCATTCGCCGTGTCCGCCTCCGCCCGTGT 351 29 100.0 33 ............................. CCGGAACACAGGGAGGGACAGAGGGACACTGAC 413 29 100.0 32 ............................. TTCGCCGACCAGCTCCCGGACAACGCGGTCAT 474 29 100.0 0 ............................. | C [483] ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : GGGTTGGTCCCCACCAGGCCGCGGCCGTCGCGTAGTTCGGCCGG # Right flank : GCGGTCTCGTTCGCTGGCGCCACACCCAAGAGGTGGTCCCCGCGCGTGCGGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 807-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000118.1 Streptomyces sp. SID4936 SID4936.c129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 806 29 100.0 32 ............................. GCCCGACTGACGCCGGAGCGCGAGCAGGAGAT 745 29 100.0 32 ............................. GAGTGGAACGTGACAGCCGACGACGGCACGGT 684 29 100.0 32 ............................. CTGCAGCATCAGCTGGTCGATCGGGTCCGGGC 623 29 100.0 32 ............................. CTCCCTCCCCCCGCTCCCCCTCTAGGGAGGGG 562 29 100.0 32 ............................. ACCTCGAAGAGGCGCGACATCCCCAGGAACTT C [557] 500 29 100.0 32 ............................. GTCCTACGCCGCCCCCGCCCCGCCGCCGTAGC 439 29 100.0 32 ............................. GCTCCCGCACTACGGGCGACGCAGTCGCCGTA C [434] 377 29 100.0 32 ............................. CTCTGACGATCGACTGGACTAAGCACCAGTGC 316 29 100.0 32 ............................. CCGCACGGGACTGCGACAGGTGGATGTCGCGG 255 29 100.0 32 ............................. CGAGCGGGATGCCGTCGTAGATGCTGGTGACG 194 29 100.0 32 ............................. AAAGGCCCAACTTCCTGCGCCTTCTGAATGGC 133 29 100.0 32 ............................. CAGCTCACCGGTATCCCGATCACCGGAGCTGC 72 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : TACGCACGCCGACCTGTCGGTCGTGCACGTCGAGTCGCTGACCAGCGCGTTGTACGTCGAGGAACGCACGGACGTGGCCGTATACCAGGACGCAGTTCAGCAACTTCGCGCGGCGGCACTGTCCGTTGACGAGTCCAGGCAAATGATCAGAGAGATAAGGGACCAGCAATGAACACCAGTCCTACCGTTGACAATGCTTCGGACCTGCACGTGAGCTGGTGGAAGTCCAGCGCGTCCGGCGCCCAGTCCGACTGCGTAGAGTGCGGTGTCATCGACACCGAAAGCGTCGCTGTCCGCGACAGCAAGGTTCCGAACGGCCCGGCTTTGATCTTCGGCCGCGACGCCCTCTCCGCCATGGTCGACGCGGTAGCTGGCGGCCTTGTGTGATCCGGCCTCGCCTGCTCCGGGCGGCGTACACGCCAGGATTCATCGAAATGTCCGAATCTCAAGAAGTAAGTAAAAACAGGTTCCGCCCCACATAAACCAGCAGGTCAGCAACT # Right flank : CCGGCCCGCGCTAGGCGCGGGACGTTCGGTCAAGTGGTCCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 3937-3054 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000118.1 Streptomyces sp. SID4936 SID4936.c129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3936 29 100.0 32 ............................. CGGCCGGGCGTGAACGACGAGACCCGCGCCGA 3875 29 100.0 32 ............................. CGGCGAGGACCAGCGCACACTGGGCGCCGGAC 3814 29 100.0 32 ............................. TAGTCAGGTGGCCGAGCGGTTCGATTAACCCA 3753 29 100.0 32 ............................. CGTGATCGAGTGGACGCTCGACGACGCGGTGA 3692 29 100.0 32 ............................. AAGTACATGCGGTCGCTGATCTACCTCCGGGC 3631 29 100.0 32 ............................. GGGGCAACATCGACTCCCCCCGCTTCCTGTGG 3570 29 100.0 32 ............................. CGATGGCGTGCGGTTACAGGCGCCGGGGCACG 3509 29 100.0 32 ............................. TGGAAGGCACCGGCGAGAACACCTTCACCCAC 3448 29 100.0 32 ............................. GGCCTGTTGGCGTTCGTCACGCCGGTTATCGG 3387 29 100.0 32 ............................. TGACACTTGATCAAGGAAGCTGGGTGTCAGAA 3326 29 100.0 32 ............................. TCGCCCCAACGATCGTTCCGCTGCTGCTCCCG 3265 29 100.0 32 ............................. TCTCGTTCCTGTTCGCCGGGTTCCAGAACGTC 3204 29 100.0 32 ............................. GGCGTAGGAACCTGCCTCAGGACCTCTCCGTC 3143 29 100.0 32 ............................. AGGTGCGGCAGGCGACGGCGTACGTAGGTGTC 3082 28 82.8 0 ....C........A..........A-..A | A [3065] ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : TTGGCTTCGGTCTTGCAGCGGGCCCAGTAGT # Right flank : CACACTGCGAGAGCCAGGATTCGGGAGCACAGTTCCCATGTGTACGGGCTCACCCATTCTCGGCAGCCGCTCCCGGCGCCCCCAGGCACGCACACCGACTACCGTATGGGCCACGGGGTGTCCCTGAAGTCTTGACCACTTCAGGGGCACCCCATTTCTGGTGACCCTAATCGACCGCTTCGGTGCCCTCGCGTCCGAGCACGGAATCGCCCCTACGAAGCGCGCCACCAGCGGCTTTGCCTGCGATACGCACGAGCTCCTGCAAACGCCTCAAGTACAGGCACGGCCCAGCCCGACCGCACGCGTCGCACAGCACCGTGTGGTCGAGAACAGCCCGGTGCAGCACCGCGTCGTCAGCCACCCGCCGCCGGTCGGGGTCTATCACCACGTGATCACCACCCACACGATCTTCCCGAACGGTCGTTCTACGACGCCCCATTGCGTGGCCAGGGCCTGAACCAGGTGCAGCCCCCGGCCACGGGCACGCTCGCTGGAGACCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 89643-88943 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJE01000099.1 Streptomyces sp. SID4936 SID4936.c109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89642 29 100.0 32 ............................. GTCACCACCGAGGTCACCGAGCTGATCTCGGA 89581 29 100.0 32 ............................. GCCAGTGCGCGCCCTTCCGCGTCGGGGTGCAG 89520 29 100.0 32 ............................. TCGGGCTCGGGGTTCGGGGCGGGGGCCGGCGG 89459 29 100.0 32 ............................. GGGGGGGGTGTCGGCGGCTGTGTCGCGCAGGT 89398 29 100.0 32 ............................. TACGTACACGGCCTGGTCGCCAAACTCCACGA 89337 29 100.0 32 ............................. AACGCGGTCACAGGGCAGCACTACATTGCCGC 89276 29 100.0 32 ............................. CAGGTGAGCTCGTAGACGCCCGGCGCGCAGCG 89215 29 100.0 32 ............................. TTCGATCACCTGGACCAGGTGGAACGAGGGCT 89154 29 100.0 32 ............................. GCAAGACGGGGCCGCCCCGGACGGACAGGTCC 89093 29 100.0 32 ............................. TTCAATGTCCGCGACGCCCGTTCAGCCGATGC 89032 29 100.0 32 ............................. GCGTCGTCGGAGGCCGGCAGAAGATGGAGGCG 88971 29 82.8 0 .............AC..A...T......T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCGGAGGCCGGGGCGGACGGCCCGGACGGCCCCGACGGCCCGGAACCGGTGAAGCACCTGCTCGGCCGTCAGGTACTGCTCGTCCACGGCACCAACGACGCCCGCACGGACCCCGAGCTGTCCTTCCGCCTGGCCGAGCGGGCCAAGAAGACCAACCGCGACACCTGCCGCTTCGAGGTCCACTCGGACGGCCACGGCCTGCGCCAGCACCGCGCCGAAGTAATGGCCCTGGCCACGGACTTCGTCCGGGGATCCCTGTTCGGCCGGGCCTACGCACGACCGGTGGCCGATGCCCTGGCGGCGCCGCCACCACTGGGGCTGCGGATGCCGCTGGCGGCGGGGTTCGGGAAGTCGCTGCGGGGGTGATGGGTGGCCTGGTAGCGACGTGCCGTTCGAGAGCAGGAGGAAGAGGAGCAATGACGCTTATATCGCGTATGCCTGGTTCGGTGAAAGTGAAGAAAACCAGCATCTCCCGCCGATAAAATCGCAGGTCACGAACT # Right flank : GCCGGGCGGCGGGGCGGTGGTGGCCCTGTGCGAGGGGATCCCGGTCAGTCCGGCAGCAGGTGTCCCCGCCTCGACAGCAGGAAGCGTTTGAAGGCGGCCACCGGTGGGGTGTCGGGGTGGCCGTCCAGCCAGGCGACGCCGATTTCGCGGGCCGCTCTCGGGGCCGTCACGGTGAGTTCGACGACGCCGGGGCGGGGCACCGCGGGGGGTGGCAGGAGGGCCACTCCCAGGCCGGCCGCCACCAGGCCGCGCAGGGTCTCCGCCTCCTCGCCCTCGAAGGCCACGCGGGGGGTGAAACCCGCCTCGGTGCAGAGGTCGTCGGTGATCCGGCGGAGGCCATAGCCCGGTTCCAGGGTGACGAACTTTTCGTCGGCGGCCTCCGCGAGGCGGATGCGGCGGCGGGTGGCCAGGCGGTGGTCCTCGGGGACGACCAGGCGCAGGCGCTGTTCGTCCAGGCGGCGGGCGACGAGGTCGGGGGCGTCCGGGACGGGTGAGGTGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //