Array 1 394402-393249 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLS01000001.1 Campylobacter sp. S0112 .11826_7_59.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 394401 36 100.0 30 .................................... AAAAATAGGCGATACATTTGATTATTCTGG 394335 36 100.0 29 .................................... AACCATAATTAAAATCATCTATGATAATA 394270 36 100.0 29 .................................... ATTTCAATCAGCAGTAACCGCAAATATAA 394205 36 100.0 30 .................................... CTTAGGTAAGCGTGAGAAGTTGCTAGACTG 394139 36 100.0 30 .................................... TCACGAGTTGAACTTCACCAAAGAGATTAA 394073 36 100.0 29 .................................... AGAAAATAGCGAAACAGCAGAGGAGCAAG 394008 36 100.0 30 .................................... AGGGTTTTTATATATTATAATTGTAATTTT 393942 36 100.0 30 .................................... CCCTGCTTCCTCGATTAGCAATAAAAATTG 393876 36 100.0 31 .................................... AAATACCGATGAGCCAACACAAGATGAGCCA 393809 36 100.0 29 .................................... AAATACCGCTGATGGGGCGATAGGCTCAA 393744 36 100.0 30 .................................... TATTAAAAAAGCTATAAATCTAGATAACGA 393678 36 100.0 30 .................................... AGGCTTTAATTATCTCAAAGATAAAGGCTT 393612 36 100.0 30 .................................... AATGAGCCTACAAAATAGCGTTATTAAGCC 393546 36 100.0 30 .................................... AACGATAATCAAAATCATCTATGATAGCGA 393480 36 100.0 30 .................................... AGAAGTTCTAGAAGCTGTTTTAAATGATAA 393414 36 100.0 29 .................................... GTATATCCAAAGCATTACGCCTTTAAGTG 393349 36 100.0 30 .................................... AAGAAGTTACTCTTATGAGTGCGGTGGCGA 393283 35 80.6 0 .......................TTT..-....GAT | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.9 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAATTCTCTTTTAAAATGTGGATTTTTTATGTTGCAGTTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACAATCACTGAAAAGCAGTATGCAAATATGATAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGATCTGAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAGATCAAAAGACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TAAAATTTAAATATGGAACGCAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAACGGATATTATCAAGCGACTGGCGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATGCTTTGCCATTAGAAAATCATACTAAAGATGCTGCTAAATTTCTAAATAGAACTCTAAATAGGGTTCCTCATATCAATGAAGTTTATACCGATTTTGGAGTAGGGGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGCTGGTGTGAGACTAACTAAAAACGGCTCTTTAAATTTAGATAATGAGGGTTATTTGGTAACTAAAGAGGGTTATAGAGTTTTACCTGCAAATTACGAAGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 110010-111723 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLS01000003.1 Campylobacter sp. S0112 .11826_7_59.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 110010 37 100.0 37 ..................................... TATTTGATTGAGTTCCAAATACGCTTTGAGTTGTAGA 110084 37 100.0 34 ..................................... CCATCTGCAAAGGCTAACTGCATAGCTTCATCTA 110155 37 100.0 36 ..................................... TATAAGGGGCTTGGGTTTCAATTGCTATAAAATAAA 110228 37 100.0 34 ..................................... ATAAAGCACTGGACTATCTAAAGTGCTATGAGTA 110299 37 100.0 39 ..................................... TCAGCCATATCTTTTACCTTGACTAAAACACCCACTAAA 110375 37 100.0 34 ..................................... TCACTTGTCTTATGGCTTGATTGCTTTTTGCTAT 110446 37 100.0 37 ..................................... ACGCAAGTAGCACTTCAAGCCCAAGTAACAGTTAGCA 110520 37 100.0 35 ..................................... TTAGTTTTTATTAATTTTTATTGTATATAATTAAA 110592 37 100.0 36 ..................................... ATTGTTTTAGGCATTTTTGAAATATTCAAGAGTATC 110665 37 100.0 38 ..................................... ATGGCTCTGTGAGCTATGATCAAGGGTTTGGCAGTTTT 110740 37 100.0 36 ..................................... TTATGGCAATGCCTAAAAGCGGTAATAACTCTAATA 110813 37 100.0 39 ..................................... TCATTGACAATTTAGGCAGAAAGCAAAATGCAACTTTTA 110889 37 100.0 33 ..................................... TTAAAATACAGTGTATCAGTTTCCTCTAAGTCA 110959 37 100.0 36 ..................................... TCATCTAAAACCATCTATATTTTAGCTGGGACTGCA 111032 37 100.0 35 ..................................... ATTTGGCTATGAAGCACTAAGCAACTCTAAGCTAG 111104 37 100.0 38 ..................................... AAATATTCTAGGGATACTCGCCCCATCGGTAGTATACT 111179 37 100.0 37 ..................................... TCAGAGATTATCTTATTAAGATATAGATTTTTATTTT 111253 37 100.0 35 ..................................... TTTCAAGATTTGTATTCTAATATGGTAAATTTTAT 111325 37 100.0 35 ..................................... GTTAGCGTTCGAGTTTAATGCTTTATTAGATGAGT 111397 37 100.0 35 ..................................... TTAGAGAAAATTATAGTTTTATAATTTATCTTGAC 111469 37 100.0 34 ..................................... AAGATTGCGGTTTAGTCTTTGTTTTATATAAAAA 111540 37 100.0 36 ..................................... TTAAAGCATTTTTATTCAATTAAAGGTAAAAAAACC 111613 37 100.0 37 ..................................... AGCCTCTCTCTAAGCTCATCTATTCTTTGAATTTGCG 111687 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 24 37 99.9 36 GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Left flank : AAAATCAAACCAAGCCAATACTAAATAAAGGGACTAAAATGCAACTTATAGCCTACTCAAAACTAGCAAGCAAACATTTTAATAAGCCATTTTCTAAGATAATGCTAATTTGCGGTAATAATCTTAAATTTAAGATATTTGATATAAAAAACGATGATTTAGCTCAATTTGATAACATAATAAACAAGATTGATAAAATGCTAAATCAAGAGCTATTTCCACAAAGTTGTGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAGAACTACTGTGATGATAGAGAGTAATACCGGGGGTGCCAAAGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTGTAGTATAATTTGCATTTGTATTATAGCTAAATTTTCCCACAAATTCGCTATTTTTAGCATTTTTTTTCAAAGTGGAAAAATTAATACTTCTAAACCATAGCCAAACGCCCATAAAATAGACTAAATTTGGCTCT # Right flank : ACAAATCTAAACATCTAATCAAATTTAAATATAATCTACTATTATATTTAAATTTATTATCAAAATAGATTAGCTAGTTAAAGATATAATTTTATAAATTTATTTTTGCAATAATATTAAAATCCCTCAAGAAGGATAAAATATAGCTCTTTAATCTGCGAATCACTCAAATGAGCAGTCGAAGAAGTGCTAAGAAATCGAATAATACTATCTTTATTTAATGCATTTTTGCCAATACAAGCAGGATGAGCGATCAAAAACGCCCTACCTACACCAATCTCATTACCTAGCTTTCCATCACAAATAAAACAACTCATATCTAAATGCAATCGCCCTTCAAACTGCAAAATCATAGCATAAGCCTCAAGCACGACTCTAATAGGATTTTGGCGGTGGAATTTTTTCGCACAATTTTCTAATAAGTTATAATAAAACTCATCGCTATCTTCTACATCTCGCAAATGATCAGCTAAAAGACGCATAAAATTTTGCCAAATTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //