Array 1 101000-100368 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KQ969523.1 Streptococcus oralis strain DD15 scaffold00003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    100999	    36	 100.0	    30	....................................	AGTTGATTTTATTAGGGAATCATACTACAA 	
    100933	    36	 100.0	    30	....................................	CTATTTCACTCTCTACCTGCTTTCAGTCAC 	
    100867	    36	 100.0	    30	....................................	ACGATAATTTTCATACCTACCACCTGATGG 	
    100801	    36	 100.0	    31	....................................	GAAGTCGCTAAGTTAAACGAGCGTATCACAG	
    100734	    36	 100.0	    30	....................................	GATAAGCTCAGCGATAGAGACTAACTCTTT 	
    100668	    36	 100.0	    30	....................................	GGGATAATAAGAATGATTCTATCAAAGACG 	
    100602	    36	 100.0	    30	....................................	TTGTAAACACGTCCTTTATCAATGCCATCT 	
    100536	    36	 100.0	    30	....................................	AAGATATTTTCTGCATCATTCTGTGAGGTT 	
    100470	    36	 100.0	    31	....................................	CATATCCAGCATTTCGTTGCAAAATCGCATT	
    100403	    36	  91.7	     0	.................................TCT	|                              	
==========	======	======	======	====================================	===============================	==================
        10	    36	  99.2	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   ATCAGCTCAATGACAAGCCCGAAGTCAAATCCATGATTGAAAAGCTGGTTTCTACGATTACAGAACTACTGGCATTTGAGTGCTTGGAAAACGAATTAGACCTAGAATACGACGAAATCACCATTCTGGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGTTGAGTTAGTAAATCTGATAGAGTACATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG
# Right flank :  ACATAAAAAGCTACTCAAAAAATGAGTAGCTTTTTAACTATCCCCCTACACATAGTTCATTCCCTTATAGCAAAGGAAAATGGCTAGTGCGATAAAAAGTACGGTTGCCCCGATTCGCTGGCTGGTACTATACATCTTTCTCTCCCATTTAACTGGAAAAATGACTGCTAGAAAAGCACCGCCTACTGCGCCACCAATATGCCCTGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTGATCACGAAAAGCGTCAGGTAGGATTGCCCCAACTGCTGGATATAGGGGCTGCGAGTCGCATAGCGCAAAACGATAATCGCAGCAAATAATCCATAGAGAGAAGTGGAGGCACCTGCTGCTAGGACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAAAGAAGGAAAAACTGCTTAGAACCAAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGTGAAATCATATTGA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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