Array 1 44898-45662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWC010000019.1 Saccharibacillus qingshengii strain JCM 31172 NODE_19_length_98144_cov_157.327368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 44898 31 100.0 36 ............................... CGTTTATGGTTTCGTTTTTTACGCGTTTTGTGCGAG 44965 31 100.0 34 ............................... CTGAGTTTTGGCGGGCTGGTAACTTCGTTTGGCG 45030 31 100.0 36 ............................... GACGTATGGGCGGACTGGATCATTGTCGGCATGTCG 45097 31 100.0 36 ............................... CTCGGTAAAGGCGGCTATGGCCTGCCAGACATCGGG 45164 31 100.0 36 ............................... AGCAACTGAACACTAAACCAAGCTCGGAAAATTACG 45231 31 100.0 36 ............................... CCTACCGGAAGCGGAATCGAAGCCCCGGCCTGCAAG 45298 31 100.0 36 ............................... TTCGTCCGTTGTGAACAGGCTCCCGGCGGTTATGGG 45365 31 100.0 35 ............................... GTTTCGCCCCGGTAAGCAGCGCCACGTATCGGTGG 45431 31 100.0 37 ............................... GGAAGCATGGGTTACACAGCAGATTGAGCAGATTACG 45499 31 100.0 36 ............................... ATTCAGTTTCCTCTGGGTTGTGAATGCGCATGATGG 45566 31 100.0 35 ............................... CGGGTAAAACGTACTATCTCGATATTAACTCGATG 45632 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 12 31 100.0 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : AGGAAGCGCAGCGTTTCCTTATCGCCGGTCTCCCGGTAATAACCGTGCAGCGCGAACAGCCCGACTCCCTGCGGCCATTCCCAGTTCTCCATCGAAATGATGCCGATCGGAGCCGTTTCTTCGATCGATCCCCGCATATTTTTCATCTGCCCGACAACTTTGGCGATCGTTTGTTCAAGGTTTTCTTTTGTAAGCGTAGTCATTTTTTCACTCCTTTGAGCTGCCTGGATTCGTTCGGAAAAAGGAAAGTCCGACGACGCCGGTCGATCCTGCCCCGTCAGTGTAGGCCGATGAAAGAGATCGCGTAAATAGACAAGAATCCTGCTTATCCCTGCGAACCCCAAGCTCGCATGAAATCCCCGGCAGGTTCGCACCCCGCGCCGTGCAAGGGTTCCCGGGATTTCTCTTGTGTTTTTGTCCAGGTTTGGATAGTCTGATTCTGAGGTTCGCACTTTTGCCCTTGCCAGCCCCCATGGCACATGAGCTGATAGGGCGAGCAG # Right flank : CCGGGCTGCAGCGCGGACTCGAAACGGAGTGAACACCCCGCACCCCATCCCACCATCCAGATCCAACCCTCAGCCCGCTAACGGATTGCATGTCCGTTAGCGGGCGATTTTCCGATGGTTCCGAATTCTAACGGATCGTACGGACGCTTAGCCGCCCAAATAGGGCTCAAAAAGGGCGGAATCTGTTCTTTTTCGCTTCTAAGCGTCGTCTCGATCCGTTAAAAATATCGAACCGCCGATAGGCGCTTCTAAGCGTCACCTCGATCCGTTAGCGTGCGAAGGCGGCGCGTTGGATGCAGGTTTCCGCCGTCCGGAGACAAAGCGGAAGGACACCGGATCGCGTACAGATCGATTTTTCCGGCACAATCCGTCCACTCGTACGCCAATCCGCATCAAAAAGACGCAGCCCCCGTCCCACAAGGGACAAGGTCTGCGTCTGGGTCGTTTCTTTTGCCGCTTCTACCCTTCATCCTCGGGCTGCAGCGCTTCATCTTCCGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 101071-103819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWC010000005.1 Saccharibacillus qingshengii strain JCM 31172 NODE_5_length_239758_cov_134.626416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 101071 31 100.0 37 ............................... TCCGCTTGCTCTCCGATTTATTGTGAACTTTTCAGGG 101139 31 100.0 35 ............................... ATCTTGGCTCGTATCTGGTCGATCAGGTACATGTG 101205 31 100.0 35 ............................... CCGTTAATCGACCGGATCGTGAAGGATTACTTTGG 101271 31 100.0 35 ............................... AGGTCGCAGGCGACACGCGATCCAAGAGCGAATGG 101337 31 100.0 37 ............................... GCCCGACCCGTCGCAGGGATTGGATGCAACGAGGTGG 101405 31 100.0 35 ............................... ATACTTTTCCCCATGAGAAAAGCCACCAGCATTTG 101471 31 100.0 35 ............................... ACCCATGTCACCTTATTACCCGGGGTCGTTCTGCG 101537 31 100.0 36 ............................... CTGTTCTACGATACAGCTACAAGCTTCATAAAGGTG 101604 31 100.0 36 ............................... CCGTACTTATTAAAGATGGAGTCTGCGTCATACTTG 101671 31 100.0 34 ............................... GTCGAATCCTTCCTTTATCCACTTTGAAAAAGAG 101736 31 100.0 35 ............................... TCGATCAAATCGTCCAGTCGATGAACAATGAGTAG 101802 31 100.0 35 ............................... TGCAGCGTGCCGTCTTCGTTGAGCTGGCTGATTAG 101868 31 100.0 34 ............................... TCAAAGGCACGAAAAAAACCCGAATCCGGGCGCG 101933 31 100.0 36 ............................... GACTGGGAAACTTCCGCAAGCACAGATACCAAAGTG 102000 31 100.0 34 ............................... GGATCGTGAAGAATCATTTCGTCCAGGATCTCCG 102065 31 100.0 34 ............................... ACGTAATCAACCCCTGGAGCGTGCTGCATCATCG 102130 31 100.0 36 ............................... CCGGCATATGAAGCAACCGGCGTGCAAGCGCGACAG 102197 31 100.0 36 ............................... TGTTCGACACGACCATATACAGCGCCGGAAAGCAGG 102264 31 100.0 37 ............................... ATGCAGAAAAAGAAGACCGACAAGAGCCTGGCTCTCG 102332 31 100.0 36 ............................... CTTTTCTTCGATTCGCGACTCTACAAGCTCATCGCG 102399 31 100.0 34 ............................... CACGAACTGGGCCATGTTGCTAAGCACGTCGGCG 102464 31 100.0 36 ............................... CCGTAGCAAACCCGGTAGCCGCGGTCGGTGTCTTCG 102531 31 100.0 35 ............................... CTGTTCGATCGCCCGCGCCAGCGGCAGGATCGTTG 102597 31 100.0 36 ............................... ATGGCATCCGCGATCATCGAGAGTCGAGCGGCGAAG 102664 31 100.0 34 ............................... AGTTCAGAGGGAATATTTCGGAAATTCCCGGAAG 102729 31 100.0 36 ............................... GCCTCCAATCCTTTCAGTAGCCGCGCATAGCGCTCG 102796 31 100.0 34 ............................... TCTCCGATCCGGTCCAGCGCCACTCCTGCAGCCG 102861 31 100.0 35 ............................... TTGGATTTGTGAATGTAGAATTCGAACCATTCATG 102927 31 100.0 37 ............................... TAGTTATCCCGTCCGTTATCCACATACTCACGACGTG 102995 31 100.0 36 ............................... CTCATCGACGATATGGGCCGGCCGCGGACAATGAGG 103062 31 100.0 34 ............................... GGATGGGCATATCACAGTCGGTAAAACGTCGAAG 103127 31 100.0 35 ............................... ACTTCCGGGATTCCGTCCGACGACCGGATGCGTTG 103193 31 100.0 36 ............................... GTCCCAATCGTTTTCGGACATTCGCACGGCTTCATG 103260 31 100.0 34 ............................... GCCTTCTCGCGTATTTTTCGAGTATGGTGGATTG 103325 31 100.0 36 ............................... TGATAGAAATCGCAGATGAACCCGGCAGCATCCAAG 103392 31 100.0 36 ............................... CTCTTTTTTAAAATGTGGCAAAATTAGGGGCAAAAG 103459 31 100.0 35 ............................... CCGTTGGCGGCGAATGCACCGTGCAAGCTCAAACG 103525 31 100.0 35 ............................... GCTACTACCCCGCTAACATTAGCGAAGGGATTGAG 103591 31 100.0 34 ............................... TTGTGCTGTCCATTGTATCTGCTGATCGCAGATG 103656 31 100.0 35 ............................... ACCCCCTCTCGTAACGAGCCAGATCCCCAAGCGGG 103722 31 100.0 36 ............................... CCTGCACAGTCCGCGCCTTATGTGGCCGCGACCTAG 103789 31 90.3 0 ...........T.A........A........ | ========== ====== ====== ====== =============================== ===================================== ================== 42 31 99.8 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : CTGCTGCGGACTTGCGCCGAGCAGCAGCGGGTCAAGGTCGATCAGACCGACGAATAGACCGGCCGCCTGCGCACAGCGATACTCGTCCGCGTAACTGTCGTCCACCTCTTTGAGGTTAAGCGGCGAGGCCGCAAACAGGACCGTCAGGGTCATGATGGAGGTTCCTTTCGGGGGCTTCATTCCGGGCCGAACCGGCACCGCCGGTTTGCCTTCTATCTTTCATGGTAAAGTAACGCGGAGCGGTTTGCAATTTTGGGACAGGACAGACTGTTTGTCCAGAGGCTTGAGCGGCCGTTTTCTTCTATAAAGTACAGACAAACATAGAGCAAAAGTGCGAACCTCAAGCTCCCATGAAATCTCCGGGAGGTTCGCACCCCGCACCAATTAAGGGATAGAACGATTTGGCTTGTATTTTTGTCACTTTTTCGCTAGTCTGGTTTTGAGGTTCGCACTTTTGGAGTTCCGAAGCCTTGCCGGGCTTGGGCGGATAAGGCGAACAG # Right flank : CAGTCCAGTGATCTCCTTCAACTTGATAAACTCTATGATTTTCTGAAATTTTATCATTAATAGAGGTGGACACCCCTTCAAACGGGCACCCACCTCTATAGATTGTCCCTATCTCATACCTCTATAAATCACAGCCTACTTTACTCGCTTACAGCCCTTCCAGTACTTCAACCTTCAAGCCTTCCAGTTCGCCCAGCTCTACGGTATAATCCGCAAACGATCTGGGCTCGTCTGTGTGCGTGGTGAGTTGCAGGAGGCGATGTACTTTGGCGGAGGAATACTGGCCGAGCTTGGAAGTATGCTCCCACCAGTAGACGTGATTCACTTCCATACTGCCGTCCGGTCTGGCGGAAGAGACGTCATTGGCAAAAAGAGTCCGAAGCGACTCCTTGATCTTCTCGGCGTCTTCGAGCGTAAAGCCGGTTTTCTCAGCCAACTGTGTGTTGATACTGCCGTAACAGACATACACCCCAAAGTCGACCCGGTGCTTCATGCCCATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 119878-126706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWC010000005.1 Saccharibacillus qingshengii strain JCM 31172 NODE_5_length_239758_cov_134.626416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 119878 32 100.0 34 ................................ GTTGAAGAGGCTGCAAGCTTCCCGAACGGCAAGC 119944 32 100.0 35 ................................ TTCTTTGCTCATGTATTTGCTAATATACGCTCCGA 120011 32 100.0 36 ................................ GTGAAGATGTACAGGAAGTTCGGGCACTGATTGCAT 120079 32 100.0 34 ................................ TGTAATGAATCCTTTAGTCACGTATGTTTTGAGT 120145 32 100.0 36 ................................ CTTACGTTGTCGGCGGTGATACAGCTGGCGATGGAT 120213 32 100.0 33 ................................ GGTGGCGAACGGACGGATACACCGACGATGCAG 120278 32 100.0 35 ................................ TGATGGCGAAGGACATCGGCAATTACATCGAACAA 120345 32 100.0 35 ................................ TTCGGCAATCCGCAGCAGCGAGACGTACAGAAGCA 120412 32 100.0 34 ................................ GCCAGTATCGCGTCACGGACAAGTGGCTTGCCGT 120478 32 100.0 35 ................................ TACCGATGGAGACGCAATACATCCAGATCAGTATG 120545 32 100.0 36 ................................ GACGCTCTGTTCAAGGAACTGGCCGCCTACCACGAA 120613 32 100.0 35 ................................ GATTGAAGGGCAGCGGACCCGGCTGAACAGTTATG 120680 32 100.0 33 ................................ ATATTCTTCGTTTGCCACTACCCAATAATCTTT 120745 32 100.0 35 ................................ GGGGGAAGATCGGCAAGGAGGGAGCGATGATGTAG 120812 32 100.0 36 ................................ ATCCAAGAGTACCTCAAGGACTTAAACGCCACGCAG 120880 32 100.0 34 ................................ CGCTGTACCCGAACAAGACAATCAGAGCGAGCAG 120946 32 100.0 33 ................................ CGGTTTCGGTGGGTACAGCATCCGGGATATTTA 121011 32 100.0 36 ................................ GTGGTACAACTCGGGCGATAATCGACCGTTTCAAAC 121079 32 100.0 34 ................................ GCGTTCGGTTTCCAGAGCGCGTAAATCCGAATGG 121145 32 100.0 36 ................................ CGCGTATACCCGAAACTCTCCAAACCGCTTGCAAGG 121213 32 100.0 35 ................................ AACCCATTGAAAGAGCAGGAATGAGAGTTCTGACC 121280 32 100.0 34 ................................ AGATCGGGACGTTTGGAAATCACGAATTTATAAT 121346 32 100.0 35 ................................ TATTAAGTCAGAAGCTACTTTGAGAAGCGCATACG 121413 32 100.0 34 ................................ CCGGATGAGAAACGCAGGGACTCGCACAACGCGC 121479 32 100.0 35 ................................ AAACAAGCCGCTGACGACCTCTATACCTTCCAAAA 121546 32 100.0 34 ................................ CTGCGGGCCGAGGAGCAGCAGAACATCAAAGCGG 121612 32 100.0 34 ................................ GCTTGGTTTCACCGAAAGCGACCGTTTGGCTCTT 121678 32 100.0 34 ................................ TTCCAACAGACGAAGCAACAAAGTCGTATCTTCT 121744 32 100.0 37 ................................ CGACGCAAGCTGCACCGCCGATGTACCTACGGTCAGA 121813 32 100.0 37 ................................ CTGCCAAGATATGTTATCTGGTAGCTCGGGCTGCGTA 121882 32 100.0 40 ................................ TATTTCCGGCCCTTGTAGACAATGACATCGCCGGGATTAT 121954 32 100.0 33 ................................ TAAGATTACTCTGCACGATCCATCGACTCTTGA 122019 32 100.0 34 ................................ CCCCTCTTCGAACCCTTCGGAGTATGTGACCAGT 122085 32 100.0 33 ................................ ATCGTCATTGTGTAGATTTTAGAGCAGACTCGG 122150 32 100.0 33 ................................ AACCTCTTCGTGATGATCGGCACCGTATGCCTG 122215 32 100.0 33 ................................ AAGATCGAAAGGTCGGGCATCCCCGGCTCATAG 122280 32 100.0 34 ................................ CGCTGTACGATGACCAGATTTTCACGAATTGCTT 122346 32 100.0 33 ................................ GTATTCCACCGGATGAATCGCAGCTACGTCCGG 122411 32 100.0 34 ................................ CAGCATCCCGGTCGACCACGGATATTTGCCCAAC 122477 32 100.0 35 ................................ TTCGCTGCCCTGAGCGCTTCCGCCTCGGACGACGC 122544 32 100.0 36 ................................ CCGCTCTGGAATCTTTTCATAGCCTTTGCGAGACTT 122612 32 100.0 35 ................................ CCATGGGCGCGCCTGTATGCGGAGCTGGCGAAGGG 122679 32 100.0 34 ................................ TTCGTCCGTTGTAACACCAGCTTCCAAAAGTCGT 122745 32 100.0 34 ................................ TCGATGAAGCAGCCGTCTACTTTAACGCTCGTGA 122811 32 100.0 34 ................................ TCGTATGTATTCTATCTGGAGAGTTTTCAGGCAA 122877 32 100.0 35 ................................ GGAGAAGAGCCGGTTGCGAAGCGTCGGGTGGTAGT 122944 32 100.0 34 ................................ GGATACCTTTGCCGCACATACCGGGCACATCCAG 123010 32 100.0 34 ................................ CGTACGGGCAGACGCGACAGACGTGCGTGGGCTC 123076 32 100.0 33 ................................ ATTGGCGATCTGCTTGGCGTTCTGCAGCGTGCC 123141 32 100.0 36 ................................ TTCTTCGCTACTTCTTCATCGGTCAGATCCTGAAGG 123209 32 100.0 33 ................................ TCGGCGATCGATAGGCCCTTCCATACCCTGCCG 123274 32 100.0 34 ................................ TTCGATGGCCACCTGCCGGCGCAGGATCCGGACT 123340 32 100.0 34 ................................ GAGCCTCCCGGCCTTGCCTACGGGGATTGAGGTG 123406 32 100.0 34 ................................ CAACCGATCCGGACTCAAGTTCGTCGTGTAGATG 123472 32 100.0 35 ................................ AACCTTTCGTCTTTTGAAGCTATTCAGCAATTTTT 123539 32 100.0 35 ................................ GCCTCCTTGATGATGTCGACGGCCGGGCCGCTTCC 123606 32 100.0 34 ................................ CCGTGAGTCAGCTCGAAGGCTCGAACCGTTCCGA 123672 32 100.0 34 ................................ CGTAACGATGCCGAGTTTGGACGCGTGGGCCATG 123738 32 100.0 35 ................................ ATCAGTGACGTAAAAAAACCGTTTATCGACACCTT 123805 32 100.0 34 ................................ CACTTGCTCCTTCCGTGGGTGGCCAAACGTTACG 123871 32 100.0 34 ................................ CGTGGGACGTCAAACGTCTCATTGATCTCATGGT 123937 32 100.0 34 ................................ GGGTAAACTGTATGCCGGCGACGAGAGCAATGCC 124003 32 100.0 34 ................................ TCAAAAGTACGTAAGCTGTCGGAGAACCATTTCC 124069 32 100.0 36 ................................ AAACTGCCCAACACTTTCGAGATCCGCAGATGCCCC 124137 32 100.0 38 ................................ CGTCCAGCCTTTGCCGCCATCTGAAAAGGCCATGCCTT 124207 32 100.0 35 ................................ ATGCAATCACCCCTTTCAAATCAAATAAAAAAGAC 124274 32 100.0 36 ................................ CTCGCGGACAAGACTTTGTTTATACGCCTACGGCTG 124342 32 100.0 35 ................................ GGCGAAGACTCTTTTATCGAAGCTGAAAAAGAAGA 124409 32 100.0 35 ................................ CTGCTGTCCCGGTCGGTGCCGTGGGAGTTGGTTCG 124476 32 100.0 35 ................................ GGTTGTAACGCCATTCTAACATCATTGTGGTGTTA 124543 32 100.0 34 ................................ GACGCACAGACGGGACACATCCAGACCGAGCCGC 124609 32 100.0 33 ................................ GCAGCCATATTGATGCTGGCGGGGAATGTACTA 124674 32 100.0 35 ................................ GATTTCCGCGTCATAAGCTTCGATTCCTTTCACGG 124741 32 100.0 37 ................................ TCCACTTCCTCACCACCTTTGCTCACCGGATTCAACA 124810 32 100.0 33 ................................ TTCTGGGCCAATATATGGCGCTCTGGAAGGTCG 124875 32 100.0 34 ................................ TAGTCGACAGTCGGTCGCTTGTCAATCGAAAAAA 124941 32 100.0 36 ................................ ATATGCGTGATGATGCTACGCTTACTGACGATACAG 125009 32 100.0 36 ................................ CTGCGGCGGGGTGCTTGGCTGCGGCGGCTGCGGGAC 125077 32 100.0 34 ................................ ATCCATGCGCCTGCACCTTCCACGCAACGGTTAC 125143 32 100.0 36 ................................ CCGTTTTGGTCCGAGAAGACGATCAAAAGGGCCGTC 125211 32 100.0 34 ................................ AGGCGCTTTATCCAGTTCCTTCACTGCGAACATA 125277 32 100.0 34 ................................ ACGTGATCGGGCTTAACGCTATCGAGGTAATCTT 125343 32 100.0 33 ................................ ATGTCAGCGCGTAAAGTGGCAAACATATATGAG 125408 32 100.0 35 ................................ AAGCTGCCGCCCGGTACTGCAAAGAAGGCACACCG 125475 32 100.0 34 ................................ TGGTAATGGGTGTTGTATTGGTCGCCCTTCTTTT 125541 32 100.0 36 ................................ TAATTCTGTAATGCGCTCATACATAAAATCGTGCCA 125609 32 100.0 34 ................................ ATTTCTGCATAAGTTTTCATCGTAAGTTCCTCCT 125675 32 100.0 35 ................................ ACGACTACGTTTCCTTTTAGTTTGCCCTGGGACGT 125742 32 100.0 34 ................................ CTGATTCACAAAACCAAAAAATAAAAAGTCGCTC 125808 32 100.0 35 ................................ GGTGATGGCGTCTTATAATACGGCTGTCGCGGCCG 125875 32 100.0 34 ................................ ATGTCCGGGCGATCGACGACACCCAGGGAAGCGT 125941 32 100.0 33 ................................ AAACGGTTTTTGGGCAAAAATCCGGGCTTGTCG 126006 32 100.0 36 ................................ CAAGACGCAGTGTGGGAATTAGCCAAGGAAAACGAC 126074 32 100.0 35 ................................ ACCAAGGATTCAACACTTTCTACCAAAACACGGAA 126141 32 100.0 34 ................................ GGCTATTGCTTGGGCTGAACAAATCCTCAACATC 126207 32 100.0 35 ................................ TCGAACTCTCGCAGCCAATCCGCACCAGTCGGAAC 126274 32 100.0 34 ................................ GGATACGAGCGGGATGTTTTTATTCGCCGTGAAC 126340 32 100.0 36 ................................ GCCTTCTTCGTACCCCGTGATTTCAAGGTCGTAAGT 126408 32 100.0 35 ................................ CACCTAAAAAAGCTGATACCAAATCCGTAATGACC 126475 32 100.0 35 ................................ CCAAAGTATTCGTTTAACATGTTATCCATGACGAC 126542 32 100.0 35 ................................ GCATAACAAAGACCGCGCCGATTACCGTACTCGAA 126609 32 96.9 34 ..........G..................... ACGAACCAGGAATGGCGCGAGAAGGTCATCATTG 126675 32 87.5 0 ............A.......AC.......G.. | ========== ====== ====== ====== ================================ ======================================== ================== 103 32 99.8 35 GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Left flank : GCCCAAGGCGCCGCCCCAAATGGCTGCGCCATCTCGCCAGCCAAAGTTCCAACCTCGGTGAGATGAGTTTTGAGCAGCTGCCAGATTGATTTGGGGCCCATCGATCCGTCTTCCAACTCTTTCGTATGAGCGTAGTAGGGCAAGGATCATCCTCCTTCGATGCGAATTCGATGTTATTCTGGGTGCTTGTTTACTAAGATTCGTCTTTATCCATAAATATCCTTTGCGAATATTTGTTTCAAGTGACTATTTTGTGTAGAATAACCCATTTCAGTGCCTCGAGGTCTAAAATCTCATTTCTATGGGCACACGCCTGTTGAACAGATTGAAAAGTGCGAACCTGAAGCTCTCATCAAATCCCTGGGAGGTTCGCACCCCGCATGGTATAAGGGCTGACACACTTTTCCTTGTCTTTTTGTCCGGTTTTAGATAGTCTGATTCTGAGGTTCGCACTTTTAGGGGATCCAAGCCTTGCGGGGTAAGGCCCCAAACAGCGAACA # Right flank : CGTTCTGTGGACAGTGTCAAGCGAGGAGGCGGAAGGAGAAATTCAGTGCAGGAACTAAAGTCTTTCGAAGAAATACATATCGTAAGCATCGGCTAACGAATTTCTCCTGCAGCCCGCCAAGCTGCTCACACGAATAGGAGTTTCTCCGCACTCCCCTGCGCAACGCAAAAAAAGGAAGGCGCCCACGGAATTCCATCCGCCGGTACCTTCCTTTCCTTTTCCTATACCAGATCGCTGCCTAATCCCATTCCTTAAGCTGCTCTAGGCTGCTCTAAGCTTCCTCGATCTTCACCGTCATCCCCTGCAAAGCCGATCCCGCCGAGCGGTTCAGCGTAATCGTGCGGCCGGCAAAAGCGATCTCTTCGCCGCCTTGGAAGCGGATGTTCCGCGCCACCGCATAATGGACGACCGAGAATGTCAGCTCGAAGATCTCGTTCCCGGAGCGCGGGGAGTTCAGCAGTTCGAATTCGTCCGAACCGAAGTCCGCCATCCCGTGCGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 140118-141339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWC010000005.1 Saccharibacillus qingshengii strain JCM 31172 NODE_5_length_239758_cov_134.626416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 140118 32 100.0 35 ................................ TGGATCTGATTACCGAGACGAACGACGACACCTTG 140185 32 100.0 35 ................................ GTGTAACTCCTCAAGTTCGAGCAGTTGGAGCAGCT 140252 32 100.0 36 ................................ GGAGATTGACCACTACAAGACCCGCGAGCGTGTCGT 140320 32 100.0 34 ................................ GTACACGACGAAAAAGATGTAAAGAAAAAGAACG 140386 32 100.0 35 ................................ AGTTCCATATTGAACTATATAGAAGTCTATCTATA 140453 32 100.0 33 ................................ CTTATCGACAAACTGGAGCAAAAGGTAAAGTAA 140518 32 100.0 34 ................................ GGAGTCAGCGCCCCATTTGGACGCGTAATAAGCC 140584 32 100.0 33 ................................ AAAATGATCGTGTTGTAATAGTCGGTAAAGTTA 140649 32 100.0 33 ................................ TGATCGTCTTGGCCTGCTTACCGGACCAGCTAC 140714 32 100.0 33 ................................ CCTGTCGAGATCGTTACCGACGATGGAGAACTG 140779 32 100.0 35 ................................ CAGCTCCCGAAAGTTCGGCTGACGTCGAATATCCG 140846 32 100.0 34 ................................ AATCTTGATAAAGTCGGCGACGCGGTCAAAGAGT 140912 32 100.0 33 ................................ CGAACGTGCGCAAATCTTTGCGCAAATGACAAG 140977 32 100.0 35 ................................ TTTCCTTTAAACAAATTTTTCGCCGTGTCTTTGAC 141044 32 100.0 33 ................................ TGGGTACGATTTGCTGTCTCCTATCGCGCAAGT 141109 32 100.0 35 ................................ GATATTGCGCAGAGTACGTTTACCCCGAAGGAAGC 141176 32 100.0 34 ................................ ACGACCAGCGGCGTTTCGGACTCTGCCGAGAATA 141242 32 100.0 34 ................................ AAGTGGGTCGATCCCTTGGCTTGGAGTGGGGCGG 141308 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.8 34 GTCGCTCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : GAACCGAGGTAGAATCCGGCGATGAAAGGTCGGCTAACGGGGCGGCAGTAGCGATCGGGAGCTATTATCGTAGAAGGGGCCATTGTGTGGGCGAAATAACTGCACAGAGATCGTTATTCCGCTAAAAAAAGGACCAGTTGCTAAAATAACTGCAACGGGACCGCTATTTCCTCTACTTTCGCAATTTCCCGCCTCCCAGCGCCGAAATAACTGTTCCCTGGACGTTATTTGCCCGAGACGTGCGCTGCCTCTGCAAATAACGGTCTACAGAACGTTATTTGCAGTAGAGCGCCGAGTTCATGCAGATTCCCTTACCCTTACAAAATAGAAAAGTGCGAACCCCAAGCTCCCACGAAATCCCCGGCAGGTTCGCACTCCTTATGCCGTAAGGGATCTCGTGGTTTGAGTTGTCTTTTCTGGCGGTTTTGGTTAGGCTGTTTGTGAGGTTCGCACTTTTCGCTGTTTTTCTCCTTATGGAGGCGGCTTTAGAAAAGGGTGCA # Right flank : TATCGCTTCCTTGATGATGTTGTACTGCTTCGGTTGTCGCCCATGTAGGAGCGAGGGATTTCAAGCAAAACGCCCTACGCACCAAAAAGCCTTTTCGCCAAGCGAAAAGGCTCAACGTGTCGAGAAAGTCTGAATCCAAGTGAAGCGAGGAAGCGAAGGGAGAAATTCAGTGTAGGAGCGCCAGCGTTCGCCTTTGAAATCGAGAAAATCCAACTAAAATTCAATCTTTTTTCCCGATTTCAACACGCGACCTAAAGCCTTTCGAAGAAAGGCACATCGTAAGCATCCACTAACGAATTTCTCCCGCAGCCGACGAGCTTCTACAACGAATAGGACTTTCTCGACAACCTAAGCCTTTTCGCCAAGCGAAAAGGCTTTTTTCAACCCCTCATCCACTTCACACCAAACCATCCTCCTCAAGCGGACCGCTCCCATACACCGCCTAACCCACAATACGATCGTCCCGGTCGAAATAGACGATAGGATCCCAGTCCGGAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.40,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //