Array 1 452688-453254 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLD01000004.1 Cronobacter sakazakii strain cro3114W contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 452688 28 100.0 32 ............................ TCGCTCAGTGTTGTTTCGCGCTGCTGCGCGTT 452748 28 100.0 32 ............................ GTATCAATTGCGCAACCAGGAATAAGCTGAAC 452808 28 100.0 32 ............................ TGGCGCATCCGGCGGCAGTATCAGTTCATAGG 452868 28 100.0 32 ............................ GCAGGCTATGAGGCATGGCGAAACGCCATCCT 452928 28 100.0 32 ............................ AACTCCCAGACCGGAAGGCGGCAGATATCCTG 452988 28 100.0 32 ............................ GTTCATGATCTGCGCCGCACCGGCAGCACGCT 453048 28 100.0 32 ............................ GTTAATGGGTGGGATGCGTGCCGGGTGCTTGA 453108 28 100.0 32 ............................ GATTCAGGCGCTTAACCGCGCCGTAAATAATC 453168 28 100.0 32 ............................ TCCACGCTGCCAGCCCGCAACCGATACACAGG 453228 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCTCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCACATTTGCCGGTAAAAATGCTACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCACCCCGGGGCAGGCGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 198646-199406 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLD01000002.1 Cronobacter sakazakii strain cro3114W contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198646 29 96.6 32 .C........................... CGGTTTCGTGCCGCCGGTGCAGTCGGAAAAAA 198707 29 96.6 32 .C........................... AAACGTGTCGTGACTGCCTGGCAGGTGGCTCA 198768 29 100.0 32 ............................. ACGTGCATCTCACTTTGCGTCGAACAATTGCG 198829 29 100.0 32 ............................. CGGCGAGTTCGCTGTTCGCGCTGTCGAGAATT 198890 29 100.0 32 ............................. CCGTGGATATTGAGCTATTGAGCGTGCTCGAA 198951 29 100.0 32 ............................. ATCGCAAATATGCAGGCGATGGCAGCCGTGGC 199012 29 100.0 32 ............................. CCTGTCTCCCGAGCCTTTCCCAGATATTCAGT 199073 29 96.6 32 ...............A............. TCCAATAAATTAGGAGGTCGTCGCCGGGCTGA 199134 29 100.0 32 ............................. GTGGGGATCCAACGTGGAGCCACGGACAGTGA 199195 29 100.0 32 ............................. CGCCTCGTACACATCGCATGTGCGCAACTCTT 199256 29 96.6 32 ................T............ ACAACAGAGCGGACGCCATCGCGCATGACAAT 199317 29 100.0 32 ............................. CGTTATGCGCGACGCCCAGCGCGGCATGTGGA 199378 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCAAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACTAGCCAGGTGAAGCAGCTTAACGGTAAAAGTGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAATAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCAGATCTCGGTGACTGGTACCTCACCGCGCTGGACAATACGCCGACCCTGAACGGTTTAGTTCTGAACAGAATACAGGACGCGCTTGATCCAGGATCTCTTGATCGGTATCAGCGCAGTGTCGAACATGAACAGGGGAATGATTTTCTGATTCCACCTTCACCTTTATGTTAGGAAAATAATATGCGTGCAATAGGATATTTGCTTTACACGGCAGTTGGCCTTATTCAGTTCTCCGCAATTATTTCAGGTCTTGAATCATGGTGGGGTTTACACTGGATAATTGCCGGATTGGTCGCTTTCTTTATCGCTTACATTCTGGTGCTTGGAACGATTGTTGGTATTGTGGGAGCCATAGATGTATGGCATTGGGAATGGTGGCAAGCAGGTGGTTTATTCTTTGGTGCTATGCTATTAACCTTTGTTTTTTTGGGTTTTAGTTTGGTATTTGAATGGTTATCCAGCCGAAGAAAATATAATTGAAGTAAGGGAGCGCGCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226407-227659 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLD01000002.1 Cronobacter sakazakii strain cro3114W contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 226407 29 100.0 32 ............................. CGTTCCTGTTCATACTTACGATCAGCGGCTGC 226468 29 100.0 32 ............................. TGGCCTACGTTGATTCCCTCAGGCGAGAAAGC 226529 29 100.0 33 ............................. GCAGTGCGAGAAGTTGGCTGCGGAGAATGCGGC 226591 29 100.0 32 ............................. TAATCGAATTCGGCCTGCTTAACGATTTTCAC 226652 29 100.0 32 ............................. ACGAACCCAGCACGGCAAAACTGGCGGCAAAA 226713 29 100.0 32 ............................. CGCAGCTTATTACTCATAGGAGTTTTTCTGAT 226774 29 100.0 32 ............................. GGCTTGCTGATATCAACGCCCGCGAGCTGCAT 226835 29 100.0 32 ............................. CGTGGCGAGTCTTACCGTGTTCTTGATACCGG 226896 29 100.0 32 ............................. CACATCCTCTCCAGCGATTCGTCGCTGCTCCA 226957 29 100.0 35 ............................. GTTTATCATCTCTTCATCTTAACAAGAGGGAACAT 227021 29 100.0 32 ............................. GTTGACGGTTCAACATCTGAACGCGGGCCTTT 227082 29 100.0 32 ............................. TTAGCGACACTTCAACACCCGACCGCCTGGCA 227143 29 100.0 32 ............................. CACCGCGGCATGAGCAACTGCATTACGCTCAT 227204 29 100.0 32 ............................. GGTTTAACGGCTACGGGGCGATTCAGATCTAT 227265 29 100.0 32 ............................. TTGGATACAACCCCTTCAGCATCATGCGAGGT 227326 29 100.0 32 ............................. GATGTAGGCTTGAGCGTCGCCGCTCTTGGCTT 227387 29 100.0 32 ............................. CGTGAAAAGGGATTCTCGGTTAAGGATCTCAG 227448 29 100.0 32 ............................. CGACACGATCCGCCGCCTCGGCTATGAGGCTG 227509 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 227570 29 100.0 32 ............................. GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 227631 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 21 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAACCGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGTGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGTGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //