Array 1 87872-89364 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVXE01000003.1 Salmonella enterica strain AR-02 NODE_3_length_282103_cov_22.7873, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87872 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 87933 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 87994 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88055 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 88116 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 88177 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88238 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88299 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88360 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88421 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88482 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 88543 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 88604 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 88665 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 88726 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 88787 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 88849 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 88910 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 88971 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89032 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89093 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89154 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89215 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89276 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89337 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105497-107278 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVXE01000003.1 Salmonella enterica strain AR-02 NODE_3_length_282103_cov_22.7873, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 105497 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 105558 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 105619 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 105680 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 105741 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 105803 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 105864 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 105925 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 105986 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106047 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106108 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106169 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106230 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106291 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106352 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106413 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106474 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106535 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106597 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106700 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106761 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106822 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106883 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106944 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107005 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107066 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107127 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107188 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107249 29 96.6 0 A............................ | A [107275] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //