Array 1 253235-253458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHA010000001.1 Listeria marthii strain FSL W9-1346 NODE_1_length_919472_cov_94.621676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 253235 29 100.0 35 ............................. TGCACCATGTATTGTGTTTCTTTTCGCGTATAGGC 253299 29 100.0 35 ............................. GTCGCTAGGGCTAAAAAATGGATTGAGGAACAACA 253363 29 96.6 37 .......T..................... CCTTTATAATTATCACCAATATGCGCGAATGTCTCCA 253429 29 86.2 0 .......T......A.A......A..... | A [253452] ========== ====== ====== ====== ============================= ===================================== ================== 4 29 95.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCTGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCTGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAAAAGGATGGATTTTCATTGGTTTTTAGTCGGTCGACAGAAATAAGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGAGTTTATTTTTATCCTCCCCGTTAACAATTCCGCAACAAACACATCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACTAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGTAAAGAAAGCAACACAATTAGTGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 269503-271928 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHA010000001.1 Listeria marthii strain FSL W9-1346 NODE_1_length_919472_cov_94.621676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 269503 29 100.0 35 ............................. CCGTTAACCTCGATAGTCGCCATTTTATCTTCTAC 269567 29 100.0 35 ............................. CGGTCCTGCTTTTATTAAGTCAAATATATGTTCAC 269631 29 100.0 35 ............................. CATGATAATGCAATCGAACGAACAGCTTCACTTTC 269695 29 100.0 34 ............................. TAAATACTGTCACAGGGAAAGAGGCGTACGAGGC 269758 29 100.0 35 ............................. AGTCTTGACACGTGCCAATAGTATTTTCCCAAGAA 269822 29 100.0 35 ............................. GAGGATGCCATGATTGGTAGAAGTTTAAGAACTGT 269886 29 100.0 38 ............................. AAAGTAATTGACGTAGAAGCCTCTTCTCAGACACAGCA 269953 29 100.0 36 ............................. AATAGTCGAGCAGGGCTTTCCAAGCTGTAGCACCTT 270018 29 100.0 36 ............................. GAATACCCCCATATTATCCCCCATATTCATTCCCCA 270083 29 100.0 38 ............................. TTGTATTTCTGGTTTCTCGGTGTACTATCTCCATTCGA 270150 29 100.0 34 ............................. ATTTCCTTGAGTTTTTCTCCTACAGCTGCGATAT 270213 29 100.0 36 ............................. ACATTACTGCAAAATGTTGAAACAGGGCATGCGCCT 270278 29 100.0 34 ............................. GTTCGGACTGCTTCCAAAACTCTCATGAAGCTCA 270341 29 100.0 37 ............................. ATGGCCAATATAATTACTGCTCCTTTTACCTTTAGAG 270407 29 100.0 35 ............................. AGGGCAATAGTCGATTTTAAAGTATAGATAATCCA 270471 29 100.0 34 ............................. AAGGTTTTTCGCAGTGTATGCGTTCCAACGCGAT 270534 29 100.0 36 ............................. AGCAGAAACAAACAAGGCTAAACAACAAGTAATTAG 270599 29 100.0 36 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGT 270664 29 100.0 34 ............................. AACGAAATTTTGCAAATAATGGACATGATAGACG 270727 29 100.0 37 ............................. GACAATACCTTAGACTTAACAGAGACTTCAAAAGAGA 270793 29 100.0 36 ............................. ATCTCTACGCTGGAAACCGAGAAAAGAGCAAGCATA 270858 29 100.0 36 ............................. CATACTAAGTTGTGGAGGGACAGCGAATTATGAGAG 270923 29 100.0 37 ............................. TCGCTTGAAAATAAATTGGATATTGATAAGTATATAA 270989 29 100.0 35 ............................. TTTTGATTTTAAATGTGAAATTGATACATTGGAGG 271053 29 100.0 36 ............................. GCGGCCAAAAACGCGGGCAAGGGTGTAGCCAATAGC 271118 29 100.0 37 ............................. ACAATTATGCCAATTACAGGTAGCATTGCTGTAACTA 271184 29 100.0 35 ............................. TTGCGTGCTTCTGTGGAAAATCTTACACTAGAAAA 271248 29 100.0 35 ............................. TGTTTACGCTGAATAAGAAAAGTAGATTCACCAAT 271312 29 100.0 37 ............................. TATATACTCTTCTACGTTCAGTATTCTTTGTACTCAC 271378 29 100.0 34 ............................. TCCGATGAAGAGGTTTCGACTTCCACGGAAAATT 271441 29 100.0 38 ............................. AAAAGACGATGTAACCGAACTTTTACTAGGGAATGCAA 271508 29 100.0 37 ............................. AGCGCCCGCACTGGGTCTTCTTTCGCTTTATCAAACC 271574 29 100.0 35 ............................. AAAAAAGAGTACCTGGGAAGCGGCAACTTCACAAA 271638 29 100.0 36 ............................. AAGGTCACAGCTAAGTATATGTCTAAGCTTCTTTTT 271703 29 100.0 38 ............................. TGTACAGAATCAATTAGGTTAGATACAAATTGTGTACG 271770 29 100.0 35 ............................. CAGCCAGAAAAAGAGCCAGTGAAAGAAGAGCCACA 271834 29 100.0 36 ............................. TTTGTCCAAGCTAAAAAGAATAAACCAGTTAAGCGC 271899 29 86.2 0 ...............C......CA....C | C [271921] ========== ====== ====== ====== ============================= ====================================== ================== 38 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : AAAAAAGCAGCTCGGCAAAAGGTATTACAAGCGTATGATTTGCGTATGAAAGAAACAATTAAACATCGGGATTTAGGAAGAAATGTAGCTTATCGGCATTTAATTCGCTTAGAATGTTATAAATTAGTAAAGCATTTGATGAGTGATAAAGAATACGAAGCATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAAT # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCTGCTCCCGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTTTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //