Array 1 433499-434624 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSW01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_3407 NODE_1_length_558789_cov_4.41796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433499 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433560 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433621 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433682 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433743 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433804 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433865 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433926 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433987 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 434048 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434109 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434170 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434231 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434292 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434353 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434414 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434475 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434536 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434597 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450883-452546 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSW01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_3407 NODE_1_length_558789_cov_4.41796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450883 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450944 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 451005 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 451066 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 451133 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451194 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451255 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451316 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451377 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451438 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451499 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451560 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451621 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451682 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451743 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451804 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451865 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451926 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451987 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 452090 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452151 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452212 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452273 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452334 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452395 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452456 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452517 29 96.6 0 A............................ | A [452543] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //