Array 1 71705-72266 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLP01000001.1 Porphyromonas gingivalis strain WW3040 NODE_1_length_138577_cov_17.099_ID_28885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71705 36 100.0 29 .................................... ACCTAATCAAAAAACACAACGCCGAGGGT 71770 36 100.0 30 .................................... GGCTGGAGATTTCGTAACTCAAGTACTTTA 71836 36 100.0 30 .................................... GGAGGCGAGGAATGAGAACTACAAACAGTT 71902 36 100.0 30 .................................... TTATAGTATCGTGCTATCTTATCGATCGTC 71968 36 100.0 30 .................................... ACCTACTTAAAATGATAGACTTCAGACAAC 72034 36 100.0 30 .................................... CGATTTGAGTTTAACAACACCAATAGAACG 72100 36 100.0 30 .................................... AAGGAGAAAGGGAGTTATATTGATTTGCTG 72166 36 100.0 29 .................................... CGTCTTACTTATAGCCTTGTCATAATCCG 72231 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGGGATAAATATATAGATTGAAGCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGATATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTTGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGTCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 20204-15239 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLP01000006.1 Porphyromonas gingivalis strain WW3040 NODE_6_length_74627_cov_19.2449_ID_28895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20203 30 96.7 36 A............................. TTTCGACGCGGCCCTGTGCGGCAAGGATGCAGTCGG 20137 30 100.0 36 .............................. TGCGCATCAGTGGGCGGAGCAGTCTTCGCGCCCTTC 20071 30 100.0 37 .............................. GGTGAATCCCTCTATGGTGCAAGTGTCAAACACGCTT 20004 30 100.0 37 .............................. TCCGCTGAAACGTTCGTTATCGGCGTGGCAATGTTTT 19937 30 100.0 34 .............................. CGCCGCCCGCGACAATGCCCTTCGCGACGTTCTT 19873 30 100.0 36 .............................. CTTACGAGAAAAACGTACGAAAAAATAGTTTTCATA 19807 30 100.0 36 .............................. TATCCTCGTACAGGTTTGCCACCTTGTCGGATACGT 19741 30 100.0 34 .............................. TTATGCGCGCGCTTGTTGTCAGCGCACTACTGAA 19677 30 100.0 35 .............................. AACCTGTTGAGCTACAAAAGACCCGGAATCTACAA 19612 30 100.0 34 .............................. CAACAGACTATGCTAATAAAGCGCTGGTAGTACA 19548 30 100.0 36 .............................. TAGATGAGGATGCCATGCGGGAAATACAGAAAGAAG 19482 30 100.0 35 .............................. TTACTCCTCCTTCAGAATTGCTTGCGCCTCTTGTA 19417 30 100.0 36 .............................. CAGAGCAGCCAACATGGCACGCTACGCCAAGATGCT 19351 30 100.0 36 .............................. CGGCATTGCGTCGCGTGGCCTTTATGCCGGCTGCAT 19285 30 100.0 38 .............................. GAGAGAGGGCGCGGCTGGTGTTGTCCAGCTGCACCTTC 19217 30 100.0 37 .............................. CAACTGCTGATTACCACGTTGGGAGCTTATTATGCCG 19150 30 100.0 36 .............................. TCAACGTCGTAAGTCAAGAGAACAATACGACCGCCC 19084 30 100.0 36 .............................. TTTTCTGAGTCTTACAACCATATCACCCGCTCTCAT 19018 30 100.0 35 .............................. TTTCTGAGTCTTACAACCATATCACCCGCTCTCAT 18953 30 100.0 37 .............................. CTGCATACCGACCTCTTCCAACGAGCCTGCATCGCTC 18886 30 100.0 36 .............................. TCGAAAACGACAAGAAGTCGAAAATACAAGGGCTTC 18820 30 100.0 35 .............................. ACGTAAGGCATACCCGTTTCGATCTGCTCTTTCGT 18755 30 100.0 35 .............................. AAAATTCTTTTTTCTTGTCTCTGTTTTGTAACTAT 18690 30 100.0 35 .............................. TATGTTCGAAAAAAAAGATGTAGACACGACAGAAC 18625 30 100.0 35 .............................. CGTCCAAACGATTGTCCTGAAAAAGATTCTCCGTG 18560 30 100.0 36 .............................. GGCTTCCGATTATCCTGCCCTGCCCCGAGCTGCTGA 18494 30 100.0 35 .............................. AAAGCAGCGTTCATATAAGGATATATCCTACAATT 18429 30 100.0 35 .............................. TCCCGGCTTCTCAGGGTGACGATATATATCGTGAT 18364 30 100.0 36 .............................. ACAGCTGATAAGGCAGCTCTCTACAATCGCGTCATC 18298 30 100.0 35 .............................. CGAAGCCACCCACTTCTTTTCGACTGACGAAGTGA 18233 30 100.0 37 .............................. GTTAATTACTTCAAAGGTCTCTTGAATGAATCAATTG 18166 30 100.0 34 .............................. AATTGTCAGAAAACCGCCCACCCATCGAAATCCG 18102 30 100.0 36 .............................. CGCGGCCTGAAATCGTGTTTAATTGTTCTACGCGGT 18036 30 100.0 36 .............................. ACTTTCTTTCTGCCATTTGTTAAATAATTACAACTC 17970 30 100.0 36 .............................. TCGGGGTTCGTCGACTCCCTCGATCAATCCCTTTCG 17904 30 100.0 37 .............................. TCGAGGCGACAGAATCGATTATCGACAAACTCCAGTC 17837 30 100.0 35 .............................. TGGCGCGAAAGTCCACAAAAAAGCACCCATCCTAA 17772 30 100.0 36 .............................. CAGAGCAGCCAACATGGCACGCTACGCCAAGATGCT 17706 30 100.0 34 .............................. CTCCGTCCATCCCATCTCGCGAATAGAGGATACG 17642 30 100.0 36 .............................. TCCCCCTTGGCCATGGCGTCCATCGCATCCACCTGC 17576 30 100.0 38 .............................. GAGCTTGCGGAACGTCTAAATAGCGCGGAATCGGTGCT 17508 30 100.0 34 .............................. TGGAGAGTATTATTAGCTCAGACTCCAATACTTC 17444 30 100.0 35 .............................. ATATACGACGATATAGAAGAAGACGAAATGCTCCT 17379 30 100.0 36 .............................. AAATCAATCAAACAATATCAAATGTTGAAAGGTCAT 17313 30 100.0 37 .............................. TAAATCAATCAAACAATATCAAATGTTGAAAGGTCAT 17246 30 100.0 35 .............................. CTTTTGCCACATGTGAAACTCAAAAGATAACACAC 17181 30 100.0 37 .............................. GGCACCTACGACCCATCGAGGGGGCTTTTTCCTCGTT 17114 30 100.0 35 .............................. TTTTTCATTTATTCAATTCTATAGTTAAACACTTT 17049 30 100.0 37 .............................. CGAATTCCTTTCTAAAATCTGCCACAGACATTCCCGC 16982 30 100.0 37 .............................. AAAAAGCGTACCCAATAGTGGATCTTCTCGAAATCGG 16915 30 100.0 36 .............................. GCTGTCTATGACCTGACCGTTTCGTCTATCGAGCAT 16849 30 100.0 35 .............................. GACTTCCGTAACGGCAAGGTGGTAGGGGGGATCAG 16784 30 100.0 36 .............................. ACGCATGACGGGGTGATCCCCGACGAATTGCCGCTG 16718 30 100.0 35 .............................. CCTCTCGAAGATGGGAGAATACGAGTCCGTCGAAG 16653 30 100.0 36 .............................. ACGCATGACGGGGTGATCCCCGACGAATTGCCGCTG 16587 30 100.0 35 .............................. CTTCGACGGTACCCTGTTCCGGGACGCCTTCCCCG 16522 30 100.0 35 .............................. TGAACAGCCCAGACACACCGCTCTTCAGCAAGGGA 16457 30 100.0 35 .............................. TACCCGATATTGCGGGTACCCTTCGTGTTCCTCAA 16392 30 100.0 37 .............................. ACGGAGCGGGATGAACTCCCCTATTACTTTCTCGATT 16325 30 100.0 36 .............................. ATAGATCGCCACCCGCTCCCATCTCAGAGACACGTA 16259 30 100.0 35 .............................. AAACTTGTCGTCGTAGCTATCAAGGCTACAACGAT 16194 30 100.0 35 .............................. TGCCTTTCCGGCTGCGGACAGATTGTATGAAATCT 16129 30 100.0 37 .............................. TTTCGAGAGAGCAGCATATACCCGTCAGCCGAGAACA 16062 30 100.0 35 .............................. ACCCGGAGACTTGTGCGTGTTGCCAAGTCTACTCC 15997 30 100.0 36 .............................. CCATCAAGGCCGCCTACAAAAAAGGCGAGCCACTAT 15931 30 100.0 36 .............................. AGCCCACTGAATTTGACGCACGAAGGCTTGCACCTC 15865 30 100.0 36 .............................. ATTATAAGCGGATGCTCGCCAAGAAACTCTCCCGTA 15799 30 100.0 37 .............................. AATACTTTTTTCAAAAACTGTAAAACTTATAAAGTTA 15732 30 100.0 37 .............................. CAGGGTATAACAGGGTTAGCCGCCATGTGGTCTACGT 15665 30 100.0 35 .............................. CCTCCATTCGCCCCTTTGTCCTTGCCCTCTCTCTT 15600 30 100.0 36 .............................. TTGATTCTGCAAATCAAGAAAAATGGGGTATCTGCA 15534 30 100.0 37 .............................. ATTTCTTTTTTTGTTATCAAAAAAGAGCGGCCATGCT 15467 30 100.0 36 .............................. TGGATGTTGTTCCAGTCGAATCTCTTTCTGCCTACG 15401 30 100.0 37 .............................. TTGTCTCCGCTATTGTCTCTGCCTGCTACTATGCCGT 15334 30 100.0 36 .............................. CATAAGTGAAGAGGAGTATTTTATCCGGCAGGCTTT 15268 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 76 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAGCCATGATGAGAAATTATCGTGAGTATGCACCTGTAGAACTCGGAGGCTCGCCTGTGCAGGAAATATTGGACTATGCTTCTCTCGAAGGAAAAGATTTCACAAGAGGAGAGAAGTTTTCACTCGATATGCCTACAACGAGCAATGTTCTTCAGTACAAGACCGAGGATGGCACCAAGGTTTCCATCCGTCCGTCGGGTACTGAACCGAAAATCAAGTTTTACATCGGAGTTCATTTCTCGGTCGCTAATGAGCAGGAATTAGACCGGGCCTATATAGTAGCAGAAGAAAAGATTGCTACCATCCTCCACGACCTCGGTGTCTGATCTGCTTTTTCGGCTATAGATTAAGATAAATCAAGGGCTGCACCACAAGGGACTCTCCCCTTTGGTACAGCCCTTAGTCTATTTTTTTATTTGTATGATATCCCCTATGCCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 53354-52360 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLP01000006.1 Porphyromonas gingivalis strain WW3040 NODE_6_length_74627_cov_19.2449_ID_28895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 53353 37 100.0 39 ..................................... TCGCATTCTTTTCTGCATGTGATAAAGATATGGTAGATG 53277 37 100.0 32 ..................................... TGATAATAAACAAAAGTCTAACTTAAAATTTT 53208 37 100.0 34 ..................................... AGAAGACCCTACGTTTTTTGTAGATGACCAAGTC 53137 37 100.0 37 ..................................... GAAATCAACGTAGATGGTTCGACGCACCACCCACTAT 53063 37 100.0 37 ..................................... AAAAAAAAAAGAAGAAATGATTACCAAAGAAGAGCTT 52989 37 100.0 37 ..................................... TTATGAAAACAACAGTTATGTCGCGAGAAGATAAAAA 52915 37 100.0 39 ..................................... AGAACAGGAAGGAAGCAAGACCTCAGCAGTAGCATAAAA 52839 37 100.0 35 ..................................... CTCTTTGAGGAATACATAACAGCAACAGTTGCAGC 52767 37 100.0 38 ..................................... AAATACGATGAAGTTAGTGTAATTAATAGTCTTTTGAG 52692 37 100.0 38 ..................................... CCGTAATGGTACTGTCATTATTTGGGCTTCTAATCAGG 52617 37 100.0 37 ..................................... GCTCCTTATGTGCCGATTGAGGTGGCTTCGTTCTTAG 52543 37 100.0 36 ..................................... TTGAAAGGGGAGCTGGACAATTACAAACGAATAGAT 52470 37 100.0 37 ..................................... GGGACATATTAGACCAAGGCGGCGAAGACATAGAGGG 52396 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 37 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : GCCTGTCCCCTCCCCCGAAAACGACCGAACTTTCCTTTTCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGTGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACAAAAGAGGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATACGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATCAGT # Right flank : TACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATGAGATTACCTGATTTTCTGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAATAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGTCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCCTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTCGAAAAACTAAACCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //