Array 1 19574-19362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQG01000214.1 Escherichia coli strain HT2012134 scaffold214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19573 29 79.3 32 NNNNNN....................... ACAAAACGCGATCAATACAGTTTTGTTTTGCA 19512 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 19451 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 19390 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGCCAGCCCTTGTTAACGTCTTCGCCGTTCGGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGATAACTCGCGCTCATCCATTTTGAATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATAATCAAAAGCGGCCAGAACTGCCATTNNNNNNNNNNCGCGCCAGCGGGGATAAACCGGCTGTTTGTAAATTTAGAATTGCTGACTGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACCACCGCCCCGACACCACATATAGTAGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAGTCATGAAGACTTCGACTATTTCTTGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGAAAAATGCTACAAAAATGAGCTACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20581-19704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQG01000214.1 Escherichia coli strain HT2012134 scaffold214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 20580 29 100.0 35 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACNNNN 20516 29 79.3 32 NNNNNN....................... CAAAAAAATAGATTGGAAAACATTTAGATTCA 20455 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 20394 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 20333 29 100.0 84 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 20220 29 75.9 32 NNNNNNN...................... AATTTCTGGAAAAAAACAAATTCAAAAAATTG 20159 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCNN 20098 29 72.4 32 NNNNNNNN..................... CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 20037 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 19976 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTNN 19915 29 72.4 32 NNNNNNNN..................... GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 19854 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 19793 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 19732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================================================================== ================== 14 29 92.9 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GAGAAAAATGCTACAAAAATGAGCTACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCGCCAGCGGGGATAAACCGACAAAACGCGATCAATACAGTTTTGTTTTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGGCGCGGGGCGTATTCCCCGGCGAGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATATTTCATGCAGCGTTCTGAATGAGTAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 36603-36082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQG01000214.1 Escherichia coli strain HT2012134 scaffold214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 36602 29 75.9 32 NNNNNNN...................... CCGAGCCCGATTATCGGCATGAGCGATGCGGA 36541 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 36480 29 100.0 33 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAANNN 36418 29 75.9 32 NNNNNNN...................... ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 36357 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 36296 29 96.6 32 ............................A CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 36235 29 96.6 32 .A........................... ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 36174 29 100.0 35 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGANNNN 36110 29 75.9 0 NNNNNN......................A | ========== ====== ====== ====== ============================= =================================== ================== 9 29 91.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGTCAATCAGCGCGTCTATCGCGTCACTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCTGAATCCGATATTCTTCAGCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NNNNNCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //