Array 1 754828-758899 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUF01000001.1 Methyloprofundus sedimenti strain WF1 Contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 754828 28 100.0 32 ............................ AAAGCAAAGGCTTTACGATGAAATAACGGGTT 754888 28 100.0 32 ............................ CATTGCAGTCAAATGAGTTTGTAATAAGTGTG 754948 28 100.0 32 ............................ AGCTATCTGGAATTAATCTCAATTCACCGTTT 755008 28 100.0 32 ............................ AAAGTATAAGGGTGAGGATAAAAATGGTTTAA 755068 28 100.0 32 ............................ ACGCGCGCTTGATTGGGCCGAGGGATTAAGAG 755128 28 100.0 32 ............................ GTGATTATGGGGTTTTTCTGCGCACAGCTAAA 755188 28 100.0 32 ............................ GATGCAAGTGTTCTAAGCTCTAATAAAAAAGG 755248 28 100.0 33 ............................ CGACAGTATAAAATTGGATGATGGCGGGGAAAA 755309 28 100.0 32 ............................ GCCATACATGCTATTAAAAATACTAAATGAGC 755369 28 100.0 32 ............................ GGCAATGTGTACTCACCATCAACTGACAAGCC 755429 28 100.0 32 ............................ TGCTAACATTGCTACGTTAAAACCGATAACCG 755489 28 100.0 32 ............................ GTCATTGCAAAGTTAAAAGAAAAGAGCTGGGT 755549 28 100.0 32 ............................ AGCGGCGCTTTAAGCAATTTATTAATCAAACT 755609 28 100.0 32 ............................ GGTTGAATTAACCATGGGACATCCTAATAGTA 755669 28 100.0 33 ............................ ATAGAAACTGATGGGGGTAGAGGTTATACGGGG 755730 28 100.0 32 ............................ GACTGAATTAACCATGGGACATCCTAATAGTA 755790 28 100.0 32 ............................ GTCTGGTGCGGATCTTGCAATTATCCCTCACT 755850 28 100.0 33 ............................ AGTAGAGTACCCATACAAGTTTAAAAACAATCC 755911 28 100.0 33 ............................ AGGTAGTTACTCATGTGCCAGGGCGTTTGTCAG 755972 28 100.0 32 ............................ GTTTAAATACATAGTTAAAATTGAAGATGTAA 756032 28 100.0 32 ............................ AGGCAGACCTTTTAAGTCTGATAAAAAGCAGC 756092 28 100.0 32 ............................ TGGTTTTAATGTTCTGCATAAAATATTAGCTA 756152 28 100.0 32 ............................ AATGCTGATTCGCCTTCCTTTGATACTACTGA 756212 28 100.0 32 ............................ TAGCAACAATTGTTCATCTTCGGCACACGAAC 756272 28 100.0 32 ............................ TGGAAGCGAGGATCATTATTTAATAATTGATA 756332 28 100.0 32 ............................ TACTTCAAATGGTTCTAGTGATGAATCGCGCC 756392 28 100.0 32 ............................ AGGAGTCAGTCTGATGACGGGGTTCGCGTGAT 756452 28 100.0 32 ............................ CATTGAAGTTGATCTTCCTAAAACTAATTGTT 756512 28 100.0 32 ............................ TTCTACTATGAAGGATGTTACATGCTTACGCA 756572 28 100.0 32 ............................ TATAAGGTGTAAATTGCCTGATGGGTCACAGG 756632 28 100.0 32 ............................ AACTACAGCTTGCAATTCTGTATTCGATGAAC 756692 28 100.0 32 ............................ ATCATCACAAAAGTATTCAGTTGGACAAACTC 756752 28 100.0 32 ............................ TGAGCGTTTTAGTCGTTGGGGATCTTCAAGTA 756812 28 100.0 32 ............................ TAAATTAAAATATCCTGGCGGTTTTAAATTTC 756872 28 100.0 32 ............................ TGTTCCAGAAAATGACACGGCACAAAACAATG 756932 28 100.0 33 ............................ GGCATAGTATATGTTGGTCTCCTGAGCTAAGTT 756993 28 100.0 32 ............................ ATTACTTTAATTAGCACATCTATTTTTAAATT 757053 28 100.0 33 ............................ ATATTGGTGATCCTGCACTTCGCCGATTTCGCC 757114 28 100.0 32 ............................ AAGTTCTGAATGTATAAAAATTTCAATTTCCA 757174 28 100.0 32 ............................ TTATTCGTGCTTATGAATCTATAATTTATTTT 757234 28 100.0 32 ............................ CAGGACATGGGTCTGTTTACTTTTTTAAAGAT 757294 28 100.0 32 ............................ AGTACGGCCAGTGATGGGACAATTACCAAGTT 757354 28 100.0 32 ............................ TGAAAGCATGATGACTAAGAATTCGCCATTAG 757414 28 100.0 32 ............................ CGCTTCAGTGGTTTGAATAGTGGCTTTAATCG 757474 28 100.0 32 ............................ ACGTTAGATGCGCAGCCAGTTTATGTCACAAT 757534 28 100.0 33 ............................ CAACGAAAAATTAGGGCCATCATCTAAAACAAC 757595 28 100.0 32 ............................ TTTTGAGGGTAGGCCGGATTTTCGTGAATCTT 757655 28 100.0 32 ............................ GATACAAAAGGTAATTTTGCTTTACCAGCGAT 757715 28 100.0 32 ............................ GGTTGATGCATTTATGGATGATAGGCTGTCTA 757775 28 100.0 32 ............................ ACTGATAAAAGGGAAAAGCCATCTCAGGAATG 757835 28 100.0 32 ............................ ACCTGACGAATTTCATTATTTCCACTCCAACT 757895 28 100.0 32 ............................ AATTATGAACATCTAGTTTAAGTTCAGAAATA 757955 28 100.0 32 ............................ TTCTTCATGTCCTTCGGGTCACGAATCTCCTG 758015 28 100.0 33 ............................ TACTGACAAGCTGCATGAGATCCATGATGCGAT 758076 28 100.0 32 ............................ CTGTAAACTGGATGGCCACGCCGCATACTCGA 758136 28 100.0 32 ............................ CATTGGGCATATAGCGGAGATCAGGATCAGCG 758196 28 100.0 32 ............................ TACCGGAACAAACAAATTATATTGCTAGTCAA 758256 28 100.0 32 ............................ GCTTGGAAGTGAAACACTTGTCATTTCAACAA 758316 28 100.0 32 ............................ CAAATAAATATCGACATCGGCTTTCAAGCTAT 758376 28 100.0 32 ............................ AGTACAACACGAACTCATCGACCAACCCACTA 758436 28 100.0 32 ............................ ACGGATAGCTAACCGGCAATCTATGGGCAGCA 758496 28 100.0 32 ............................ ATTCCAATGCTTTGCAGCATATTCAAAGAATT 758556 28 100.0 32 ............................ ACGCCGGTGACAATGCCACGGTAGTTCTGGCC 758616 28 100.0 32 ............................ AGGAAGTGCTCCATTTAAAAATTGGTCAGAAA 758676 28 100.0 32 ............................ AAAGTGTGGAGTACTACACTGGCCGAAGCCCT 758736 28 96.4 32 ............G............... ATTGCGTGATGGCCGCTCGATCCCGGTGACAT 758796 28 100.0 47 ............................ ATAAATAGCGTGTTACGTGTTACGTGTTACGTGTTACGCGCTACGTA 758871 28 75.0 0 ......C..T.T...A.T.......T.T | C [758894] ========== ====== ====== ====== ============================ =============================================== ================== 68 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTTTCGCATCCGTCAAAAATAGACTTTGTGGCGCGAGCAAAAGCAATGGGTTATCAAATTGTACTGGTATTTATCCATTTAGAACTCGTCTCGCTTAACCAGGCACGAATTGCACAGCGAGTGAGTGAAGGTGGGCACTATGTACCAGAAGAAAAAGTCCTTAGCAGAATTCCCAGAGTATTACACAATATTCAACAAGTTTTGCCTTTATGTGATCACAGCTACCTATTAGATAATTCACGCTTCGATAATCCTTTCCAGCAAATCGCTGAAATACACACCGGACAACTTTTAATACAAAAAGAACCGTTGCCAGCGTGGGCACAAGAATTGCTGAAAGATTATTTGGATTGAACACAGGTTATTTTGACCAAAGTTTTTTAAGCTCTTTAAAAATATATATAAATTAATAAGTTATAAACGGCAAAAAATTATTGGTGTTTTGATGGAAAAAAACCTAACTGCCTGTTGTAACTATTTTTTTGTGCTTTATACTGTA # Right flank : TAAAGTCATGTTGATGTTAAGGTGATACGATTTAATTAAAGTTAAGCTGATCTCAATGATTTTGATGAGTTATTGTGTGTGTTTCATTCCAGCAATAGCTGTTTTAAAGTAGCAAATAAGCAATTGAACAAGCAACCATAATGACCAGGCTCAGCCAGCACCAAACCCACATCACTTTCCCGGGGCGCGCATAAGCGGGCACACTTTTACCAAGCATAGCCAGCGTATTTAATCCAGCAAGTACAGGACCAACTACAAATGCGATTATGGTTGCAACTTTAACCATGGCCTGCATAGATGTTAAAAAGAAAAACAATATCAATACCGTGCCTGCAACTGTAAAAATCAACCAAAAAAGATAATGTCTTTTCTGGTTTTTATGATTCATCATTTCTGGAAACAGTAACTCACTGGAGGCACTGAGTGTTCTGGGGTATGCATCCAGACAGGTCGGTGTGGTGCTGAACATAGTGGTAAATGCCGCTACCGCAACAATGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1464604-1461192 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUF01000001.1 Methyloprofundus sedimenti strain WF1 Contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1464603 32 100.0 33 ................................ TAAAAATCCTTTAGCATCAATTAGTAATAGTAG 1464538 32 100.0 32 ................................ TTTTATAAAGGAAAACAGTATCATTCTATCTT 1464474 32 100.0 33 ................................ TCAACTGAAGATTCTACAGCAACTTTTAAAGTC 1464409 32 100.0 32 ................................ TTATATTTATATATATATATAGTAATTATATT 1464345 32 100.0 32 ................................ TTTTATACTCTATACGATAGTAGTCAAGTGCC 1464281 32 100.0 33 ................................ AATCCACTCAACAGTATATATTTAAACAGTCCG 1464216 32 100.0 32 ................................ ATATAGTACTTTATCACCTTGCAAGGTGAAGT 1464152 32 100.0 33 ................................ ACTTGCACTAAGAAGATGATCGACTATAGATAT 1464087 32 100.0 34 ................................ AGAGAAGGCTAGTGATAATGTCCCGTTCGCAAGA 1464021 32 100.0 34 ................................ CGCGAGTGTAGTGCTCCAGACTTTGGCTTTGCGG 1463955 32 100.0 33 ................................ TTATACCCAAATTATATTTATATCATGTATCAG 1463890 32 100.0 33 ................................ ATTACGCTAGTTCTATGCCTTATGGAAGTATAG 1463825 32 100.0 34 ................................ TAGCCTCTGTATAACTGATACCCAACTCTCTCCA 1463759 32 100.0 34 ................................ ATAAAAGATGGTACAAGGGCAGCGATAAGAGCCG 1463693 32 100.0 32 ................................ CATAATAGTCAAGTGCGAAGCTATTGCGGCTC 1463629 32 100.0 35 ................................ TCATTAATCTTATCAACGGGCAAAACTTTGAGTGT 1463562 32 100.0 33 ................................ TTGTTCTGAGGGTCGTAAGACTAATGTATGGAC 1463497 32 100.0 35 ................................ TTTATATAAAATGTATCTAGTATCCTTATACTTAT 1463430 32 100.0 34 ................................ AGAAAAATACTGTCGAGATACTAGCTAGTAAGTC 1463364 32 100.0 32 ................................ ACCCATACAAACCATAAAAATAAGACATTAGA 1463300 32 100.0 32 ................................ AAGAAGTTAGAACAGTATGCGATATGTCATGT 1463236 32 100.0 33 ................................ ATCGGCTATAGACTTATTATAAGCCACATATAG 1463171 32 100.0 34 ................................ AAGCATGGAACGCACCTACACCAAAGGCAAAGTC 1463105 32 100.0 34 ................................ ATGTGGTCATCGTTAAAGTCAGAAGGTGCTAATT 1463039 32 100.0 32 ................................ TTTCAGTATCACTGGCATAATATCTTGGTAAT 1462975 32 100.0 32 ................................ AACATTAGCATTTACAGCCCAAGCGTGACCTG 1462911 32 100.0 32 ................................ AGGTAAAGCATCTAGATAAAGCTCGAATAGTT 1462847 32 100.0 32 ................................ AATATAAATGATCCTTACCATGATGAAGAGGC 1462783 32 100.0 33 ................................ TTAATGTCCTCTTCAAAGTCCGCATCGTCTGGG 1462718 32 100.0 34 ................................ TAATGTATCGCCTGTCTCAATCGAATTACCGTCA 1462652 32 100.0 35 ................................ AGCGTCTAATTGATTGCCGTCCTTGTAATCCATTT 1462585 32 100.0 32 ................................ ATGTATGCTCTAACTAACTCGAATATCTCTTT 1462521 32 100.0 32 ................................ TCTTTCTGCATTTACAAACACCTATACTCTCC 1462457 32 100.0 33 ................................ TCTTTTAATTTATTTGTTATGCCGGCCATTTAT 1462392 32 100.0 34 ................................ GTATATTGTTAACTGCATCTACAGAAGTAGATCC 1462326 32 100.0 35 ................................ TAGCGATAACAATGTCATCATTAAATAGCTGATAC 1462259 32 100.0 32 ................................ ACGAAAACCGTACTGTAATGCGCCTGGCGTAG 1462195 32 100.0 33 ................................ TTCCGGAAGATCTGTTGATGTCAATTGTTATAG 1462130 32 100.0 32 ................................ CGAAATACTTATTGCATCGCTCATGACAGACT 1462066 32 100.0 33 ................................ CGTTAGTATGAAATCCATTAGGTATTGCAACTG 1462001 32 100.0 32 ................................ GAGTAAATCATAACGAGCTGGATACCCGTTAT 1461937 32 100.0 33 ................................ GATATCAAGTTAGTTACTAACTAACCCGCCGAG 1461872 32 100.0 34 ................................ TTTGTATAATATGTATCGGTTATCCCGATACTTA 1461806 32 100.0 34 ................................ TAGGTTATCTGGAAGGGCTAGACTTATTATATTC 1461740 32 100.0 34 ................................ GATGGCACAGAAGATGCCATATTGCTATCCGTGC 1461674 32 100.0 32 ................................ CACATATGCTATTTAATGCATCATTAAAACCG 1461610 32 100.0 32 ................................ TTACACTTGCTTGTCTTTGGATGATTCGCCCG 1461546 32 100.0 33 ................................ TTTAACTCATATTAAATCAAGCAATTCTATTTT 1461481 32 100.0 33 ................................ TACTACTAGGCTTTGCTTTATTTACCGCCTTTA 1461416 32 100.0 32 ................................ ATATCAGCGAATGTTTGCTGCATAGAGATCAG 1461352 32 100.0 33 ................................ TGTTTTTGTGATAGGGACTGCTACTGTGGTAGT 1461287 32 100.0 32 ................................ TTGCTTGATTTTGCCATGTAACTTATTGATAG 1461223 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 53 32 100.0 33 GTCGCGTCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TGTGCCATTTTTGTGGAAATAGAGAGTATTTAGCATGATGATTTTAGTCACTTACGATGTTAGTTTTAAAAATGATTCAGGGCCAAATCGCCTGCGTAGAATGGCCAAATTATGTCTTAAATATGGACAACGAGTTCAATATTCTGTATTTGAAATTGAGGTGGATATGGCGCAATGGACAAAACTAAAAAATGAATTAATAACGGTTATGGATGAATCAGTAGATAGTTTAAGAATTTATTATTTGGGTAATAATTGGGAACGTCGAGTTGAGCATATTGGTGCTAAAGAGGTATTAGATTTAAATGGTTTGTTATTACTGTAATGCGAACTATAAGCGAACATAAAAATATTAATTCTCGCTATGTGCTTAGTTGATTGATTGTTATGAATTTTTTATTAATGAGAAGAATGATTTATAATGTTTTTGGCAGATGCTTTAATAGGTTCGCAATTAATAGCTTTATTAGCTTTCAATTTCAATCGGTTAAGCATAGGCT # Right flank : TACATCGTCGATAGACTGCCCCCCCACCCACGAATAGCCAACCTAATCAAATAACCAGCTAATTCCCCAGCCCTGTACTCGGTTTACATGACAAACCCATAAATCAATTAAATCCAATCAGGAAACAATTTGTTAAACTGCAGTGTCATTGTAAACTTATAATAACCCCATATAATTATATACGTAGTTTAACTACACCCATTTTTTAATTTTAAGAGGACTTACTCATGAATGATTTATACAAAGATATTTTAACTGGATTAGTATTTATGGTTGGCCTGCTTGGCTTTCTTTCCGGTGAATTTATCATCTCATCTGCTTTATTCGCCACTGCGGCTATTGCTAGTAACGTAAATGTGAACAGTAAACGAGGTAAAACAGGAAGCATCGCATGATGTTACCAACCGTCTTTGTACGGTTAAACCTTGCAACCAAAAGGCTTCTACAGACTTATGTCTTGGAAGCCTTTTTTTATGGCTTACAAGTCGTTTAAAACATCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2054922-2055372 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUF01000001.1 Methyloprofundus sedimenti strain WF1 Contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 2054922 36 100.0 34 .................................... GACAAATATGTGCCGAGCATGATCCGGTCAATTC 2054992 36 100.0 33 .................................... ATAACCATCATTGTTAGTCGCACAGACTCTTGA 2055061 36 97.2 32 ..........T......................... GTCATGTGCTTTGGTGCTGCCCGGTTTCACTC 2055129 36 100.0 34 .................................... GCCTCTAACAACATTTCTTGCTGCAAACTTGCGA 2055199 36 100.0 34 .................................... ATATAACATTATCCCCTTTTAACTCGAAACTTAA 2055269 36 100.0 33 .................................... AAAGTGATACCAGTCATTATCGCAGCGATACCG 2055338 35 88.9 0 .....................-...........ATA | ========== ====== ====== ====== ==================================== ================================== ================== 7 36 98.0 34 GTTAGAAAGTAGCCCTGTTTACGAAGGGATTAAGAC # Left flank : ATTTAATGCAGACAGACAGCATAACCTTGTCTTTTGTAACGCCCTTACGCATTCAACAAAAAGGGAAAATTTTATCTGAACACATGAGCGCAAAAGACTTTTTAATGGCATTGGTGCGACGCTATTATTTATTACAGGAATTTTACGGCATAGACTATCAAGCCCCTCAGTTCTCGGAGCTCGCCATAAAAGCGGCAGGTATCGCCTGTCATGTGAAGTTTCAGTGGTATGAATGGCAGCGTTATTCATCACGGCAAAAACAAGCCATGAAATTTGGGGGGGTACTCGGTGAATTACAGTTACAAGGTGATTTAAGCGAGTTTTTATCTGTTTTATACTGGGGGCAATGGCTGCACGTGGGCAATAAAACCAGCTTTGGTATGGGGCAGTACAAAATAGCTTAAATTAATAGCGAACTTTGTCGTATAATAAGCGCTCGATTAAAGTGTATTTAAGAGAAAAATAAGCAAAAAGTCGCCTTTTTTATGTTCAAGAAATCA # Right flank : AAATATTTAGTTAAATTCTCCGCTGCAACCGTTTCATTTCAATTGCTTATACGACAAATGTGTCATCGCTGATGTTGGTTATCCAAAGGGTTCTAATATTCGGGGCTTTTAATTCAGGCACAATAAGCCGCTGCTACTGACCTTCTTAACGCGACACAATACTGTCGCAGGCGACGCCTTCTCTTGCTCACAAATAAATGCGCAGCTTATTCGTCTTGTTTCCCAAAGAACACGGCGGCCTTTTATAGTCCTGGACACAGCAGTTGACTGAAGCAATTCATTACCTGATTAGCCATAACTCTCAGCTATATTCGTTATCCTGTGCTGATAGCAGGAATCTTATGCGGTAAGCAAAAATGCCCGACAACAGACTGCGGGAATGACGAGATGCTTAACATGCTGATATTGTAAATTTTATTTTAATAGGGCTGTGAGTTGTACGTAATCAGGGTTCTTAATCGTTTTCACGTCTGCACCTTGTCCAGTCTTTAGACGTATGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAAGTAGCCCTGTTTACGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 2068272-2071010 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUF01000001.1 Methyloprofundus sedimenti strain WF1 Contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2068272 36 100.0 33 .................................... TTTCCCTCTCTAACTACCTAGGGACCCAGCCCT 2068341 36 100.0 33 .................................... CTATAAAGACCTCCAAATTCTCCAGGGTCCTAG 2068410 36 100.0 33 .................................... TAAATTGCCTCCTTTACCCCATACATTCTTTAC 2068479 36 100.0 33 .................................... AGTTAAAGAATACTCTCTACAACCTTTACCTTT 2068548 36 100.0 34 .................................... CCAGACAAACACTTTATGAGGTATCTAAGAATGC 2068618 36 100.0 34 .................................... TCACTTGTTTTGATGTAACAATTGCAATTTGTTT 2068688 36 100.0 33 .................................... AGTAATTGAGCTTAGTTGTGCAGGTGTATTGAT 2068757 36 100.0 33 .................................... AACATATGACTAGTATTAATTTCCACACATTAT 2068826 36 100.0 33 .................................... CTACTATTGTAGGTAGCTGCCCCACTCCTGTAG 2068895 36 100.0 34 .................................... CGAGCAGAACTTACAGCAGCACCCGATTGTTTAA 2068965 36 100.0 33 .................................... GGTGCTGTGAATGTAATAGAACAAGGAGGGCCG 2069034 36 100.0 34 .................................... CTATGAAATTTGTTTCCGTTTCTAGTCTCTGTAT 2069104 36 100.0 34 .................................... ATATATATTGTAGGAGGCATGAAAGATCTATTTA 2069174 36 100.0 34 .................................... TTATGGCGTTGTGTTGTGCGGCTGTAATATTCTT 2069244 36 100.0 33 .................................... TGGTAGAATCTGTAACTCCTACACAGTCTATAA 2069313 36 100.0 33 .................................... GCCACGATATTTTTAGTTATTTTAGTCATGATA 2069382 36 100.0 35 .................................... TTTATTTACGCTGAGTGATGCGATAGTTTATGTCA 2069453 36 100.0 32 .................................... GGAGAAGGGAATCCCACCGAAGTGGTAATGGT 2069521 36 100.0 32 .................................... ATTAATTTATAGCGATCCTGGCCGTAACTTAT 2069589 36 100.0 34 .................................... CAAATTTGTAGGTGAACAAATAGCAAAGTCAGTC 2069659 36 100.0 34 .................................... ACAAACAATAGGTTCAATTTTATGGCTATTATTT 2069729 36 100.0 34 .................................... ATCAGAGATATTGCCGCTATAATGAGTCGTTTCT 2069799 36 100.0 34 .................................... ATCGAGACCTGGACATTGGCAGCAACCCAACTAT 2069869 36 100.0 34 .................................... AACTAAATATAGTTAAGCCTAAGAGAACGGTTAA 2069939 36 100.0 34 .................................... GTATGTGGCGCGTTGGTCTGTGCTGAATAGTACT 2070009 36 100.0 33 .................................... ATAACCATATAGCCATTAGGAACGATAGCTTCT 2070078 36 100.0 32 .................................... AAACAGTCCGGAGTTTCTGTTGTTGCTGCTAA 2070146 36 100.0 33 .................................... TGCTGCTTCTGTTTGTTCTGTCATTTTCTTGCC 2070215 36 100.0 32 .................................... GAAAGCGCTTTTTCGCTTGCTCTTGTGAATTC 2070283 36 100.0 33 .................................... TGTTTTTGCAGACTTCTTAGGTGACTCATATGC 2070352 36 100.0 33 .................................... ATCAAGGGTGGAGGGCCTGATTGCGTTACCTTA 2070421 36 100.0 34 .................................... AAAAAAAAGCGCATCAATCTGCTAGAACAACAAA 2070491 36 100.0 32 .................................... CGCATCAAGCTCTGTTTTTAGCTCGGCATTTT 2070559 36 100.0 33 .................................... GACCAAACTAAATAGAAAGGTAATCTATTTAAA 2070628 36 100.0 34 .................................... AAAAAAGGAATGATGAATGAGTTATTGACCAAAG 2070698 36 100.0 34 .................................... CATTAAAAAATCTGACAGCGCACATGCCATAGCC 2070768 36 100.0 33 .................................... GAGTATGTTTCTTCGTATTGCTGCTCTTTTGGC 2070837 36 100.0 33 .................................... GAGTATGTTTCTTCGTATTGCTGCTCTTTTGGC 2070906 36 100.0 33 .................................... GAGTATGTTTCTTCGTATTGCTGCTCTTTTGGC 2070975 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 40 36 100.0 33 GTTAGAAAGTAGCCCTGTTTACGAAGGGATTAAGAC # Left flank : CTGTCGTGAATTACATTATAAAGATGCCAATTATGAGGCCAGCTATTATATTAAGGATTGTTTGGAGGCGAAATTAAACCACCTTAGATCCACAGTCACGATAGAAATACATTCATTTAAAGATAAAAAAGAGTTTCACGACAGAAGTGTTGATATAAAATTGCTTGCTGCTGATGGTTCTTCAATGCTGCATAAATATGATTTATCCGGTGGAATAGATAAGCTTATGGATACTCAGTCTGCAACAAAAGTTTATCGCTACGATATTTCTTGAGATTGCATGTCATGGGCTTATTTGATTTAGATGATGCCTTGAGGGGGAAAAATAAAGTAAGCTAATAGTGTCTTTTAGCTTATAATTCACATTCGAATAAATAGTAGTATTTAAGAGAAAAATGAGCAAAAAGTCGCCTTTTTTATGTTCAAAAAATCACCCAATAACCCTACTTGTGAAGGGTATTTGCAGCTTATTGAATATAAAGGATTATTGGCGGCGTGCA # Right flank : CTTATATCTATCGTAAGCTGTTGCGTAGCTACCCAATATAGACTGATGGCCGTGCTCTATAAAGATGGGCACGAAAAAGACCTTTGCCCATCCTACAAGTTGCTCATATTATTTCGTGCATGTTCCTTAGTGGAGCTCATTGCAACAGTTGAAAGAATGAAAAAGACATCACATTTTGCCTATTTCAGTGCAGACTTGAGTCTTTGTATATTTAGTTTTTTAGGCTGGGCGAAAAGCATTGCAATTGTAATTAAACTAGCATTAGAATTCCCATACTTTGACTACATGGGTGAAATAGAGCGCTATCAATAACTGGAATGAAAACAGATGGTTACTACGATGCACATTTGGACACTTAACGAGCTGACTCGCCCCGTATCTATCCTGACTTGAAGACGCTGTCAAGGGGGCGATGAGGTCATTCGAAAACATTGCCGCATGCACAATTCTGGGTATTGACTTGTCCGAAGGAGGAAACGCTGTTTACGCACTAAAGCGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAAGTAGCCCTGTTTACGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //