Array 1 37121-35436 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQZP01000013.1 Campylobacter jejuni strain CB388 13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37120 36 100.0 30 .................................... TTATGGAAGTTCTTACAAGCTTGTATTCTA 37054 36 100.0 30 .................................... TAAAATCGAAGCAACTTTTTCATCATTCAT 36988 36 100.0 30 .................................... CTATCTGCGTTTGAAGCTTTTTTTTGCTTG 36922 36 100.0 30 .................................... TGATACTTACTTCATGCAAAAATGGTGCGT 36856 36 100.0 30 .................................... AAATCCGAAGTATGTCTGCGCCTTCGGCTC 36790 36 100.0 30 .................................... AAAACAGCAAATAGCCAAGGAATGTCATTA 36724 36 100.0 30 .................................... TGTATTCTTGGCTAGATTTTATTAAATCTA 36658 36 100.0 30 .................................... AAACAGCTCTAATATAACTAGAACAAAGAG 36592 36 100.0 30 .................................... GACTTTAAAAGAAAGCTTGAAGCCCTAAAA 36526 36 100.0 30 .................................... ATAATTTTTTAAAAATTTAGGAGTAAAATA 36460 36 100.0 30 .................................... TTAATCTTACTAACTTCTGATTTTGTAAGT 36394 36 100.0 30 .................................... CAAACGCACCGAATAGGTGCTATGTTTGGC 36328 36 100.0 30 .................................... CTCTTTTAAAGTAAGAGCTAGCATTTTAGG 36262 36 100.0 29 .................................... TTATGATTTGTGATGTTATTCAAAAAGCC 36197 36 100.0 30 .................................... ATCAGTTCTTTTATTTTTTATAAAAGAACT 36131 36 100.0 30 .................................... AAGAATTTTGATAAGAACAGGGCAAGTTTT 36065 36 100.0 30 .................................... TACGCCAAAGTAGAAATTAATGAAAAAGGA 35999 36 100.0 30 .................................... CACTGTTCTTGGATTAGATTTTAATTTTTT 35933 36 100.0 30 .................................... AGCAAAGAAATGATTATTGAAGCTTACTTG 35867 36 100.0 30 .................................... AAATGAAATGTTAAAATCTGAGAAAAAAGA 35801 36 100.0 30 .................................... AGGAATTTGCTAATGGTGTTTTTTTCAAAT 35735 36 100.0 30 .................................... TAATCATTTGCAAGAAATTAACGACTTAAA 35669 36 100.0 30 .................................... AAAACTTGTGTCGGCGTTTTATCTTTTGAA 35603 36 100.0 30 .................................... TTACAAGAACTCGCACAGAGTTGCAAATCT 35537 36 100.0 30 .................................... TGCTCATTAAAATGCCCTTCATCTCTATGA 35471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TATGATAAAATAAAAAAATATACAGGCAAGAATACTCAAT # Right flank : ATTCCTTTATCAAATAATGAAATTTTAAAGATTTTCGAGAATTTTTGATGAAAAATAGCAAAATTATGCTACAATATTTACAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTAAAATTCAAATAAATTTTGCTGATGGTATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATACCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 368-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQZP01000002.1 Campylobacter jejuni strain CB388 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 367 36 100.0 30 .................................... ATTTTTTGACTTTCTTTCTCTAGCTTTTGC 301 36 100.0 30 .................................... AAAAAAATATACAGGCAAGAATACTCAATG 235 36 100.0 30 .................................... CTCTTATTTGTATAGGGTTGTTTACATTAA 169 36 100.0 30 .................................... AAAGACCCAGCCAAAGAACAGACTATACAG 103 36 100.0 30 .................................... ATTTTTTGACTTTCTTTCTCTAGCTTTTGC 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TTCACTTTCAAAAGACATGAAAAATACAATCTAAGCGAAGAATGGCTTAAAGCTATTGAAAATTTTATAAGACAAAAAGCTGAAAAAGCGTTAGAATTTATCAAAACTATTTAGATTTATATAATGATAAATGATTTTAGTTTTGATAAATTTGAAATTTATGAAAATTTGGTCTTTAAAAAAATACAGCAAAGATATAGAATAAATTTATAAATATAGCTGATACCTTCAAAGAAGGAATTTAAATAATGAAAAAAGAATAAGCTTCAAATCGCAGAACATATTTTACAAATTTGCTATTGAGGAAATGCTACTACAACCCCTAGTTTTATAGTAGAACATATCCAAGATAAAGACTTTGAAAATTTAAGCTTAAAAAACTTGAAATTTAGGTATAATACTGCTTACTATGTCGTTTCATAGTTAAGCCTTTAGGGTTATTTCCGCCAAGAGTGCAAACTCAAGGCGGGTTTTATTAATCAAATCTTGCTTTTTATTCT # Right flank : TA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.08%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //