Array 1 244040-246493 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI517354.1 Pseudomonas sp. P179 acBRO-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 244040 28 100.0 32 ............................ TTCGCCGCCGACGTCGTCCGGCAGGAACTCGC 244100 28 100.0 58 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTCGTTCACTGCCGTGTANNNNNNNNNNC 244186 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 244246 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 244306 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 244366 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 244426 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 244486 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 244546 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 244606 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 244666 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 244726 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 244786 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 244846 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 244906 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 244966 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 245026 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 245086 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 245146 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 245206 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 245266 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 245326 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 245386 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 245446 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 245506 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 245566 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 245626 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 245686 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 245746 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 245806 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 245866 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 245926 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 245986 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 246046 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 246106 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 246166 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 246226 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 246286 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 246346 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 246406 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 246466 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ========================================================== ================== 41 28 99.9 33 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 256666-255018 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI517354.1 Pseudomonas sp. P179 acBRO-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 256665 28 100.0 32 ............................ TCCGCCATGCAGCCAGGGCTTACTCCGCTGCT 256605 28 100.0 32 ............................ AGGATGGCGACCCGCCAGCTGGGGGCGTCTCT 256545 28 100.0 32 ............................ TTGCTGATCGAGGGCGGCTATCTGCTCGTATA 256485 28 100.0 32 ............................ AGGAACAGTGCGGGCCAGACCTACGAACTGTT 256425 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 256365 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 256305 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 256245 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 256185 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 256125 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 256065 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 256005 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 255945 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 255885 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 255825 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 255765 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 255705 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 255645 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 255585 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 255525 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 255465 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 255405 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 255345 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 255285 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 255225 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 255165 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 255105 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 255045 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //