Array 1 866260-865633 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UIFY01000002.1 Actinobacillus pleuropneumoniae strain NCTC11407, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    866259	    28	 100.0	    32	............................	TTCGGAAGCACTATTCTTCTTATCAGCATTTA	
    866199	    28	 100.0	    32	............................	TAACGATAGTGAGCTTTTCGTCAATTTAGGCT	
    866139	    28	 100.0	    32	............................	TACACCGGAACCTTGTCCTTTACCATTACCTG	
    866079	    28	 100.0	    32	............................	CGATACCATTTGTCGTTAAGCATTACGGTTTC	
    866019	    28	 100.0	    32	............................	ACTCGGAGAAGAACCGGAATTTCCTCCGGAAC	
    865959	    28	 100.0	    32	............................	TAGCGATAAAATACATCAAAACCATCGTTCAT	
    865899	    28	 100.0	    32	............................	CTGTTCCCTTGCAAATTGTATGCCTGCTTTAG	
    865839	    28	 100.0	    32	............................	CTAAAAATCCAAAAACAGCCGAAGATATTAGT	
    865779	    28	 100.0	    32	............................	TATCCGATAACCTCTTCCTTAGTTTTGCCACT	
    865719	    28	 100.0	    32	............................	TTGCCAATATCGCAAAATACGTTAAAGATCCC	
    865659	    27	  89.3	     0	.....................C-.C...	|                               	
==========	======	======	======	============================	================================	==================
        11	    28	  99.0	    32	CTTCACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGCACGTAAAACTCAAGAGCGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCTCTTTCGGCTTATTTAACACGTATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTATATTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA
# Right flank :  TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACTGATAAAGGCAATGAATCACTCTATTGGAATATTCCTATTGCCAATACCATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTGTCAAAAGCAGGGGTTATGGTCGGTTTTTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGCCCCGGCGAATATCTACAGCAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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