Array 1 20-228 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEMFY010000205.1 Vibrio cholerae strain Vc3019 NODE_234_length_253_cov_0.772727, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
        20	    28	 100.0	    32	............................	AATAAACACGCCAAACGATGCGCCGATAGCCT 	
        80	    28	 100.0	    32	............................	CATACACGATGGTTAAGTGGATGGCTCAAGGT 	
       140	    28	 100.0	    33	............................	GGGTCTAATCGCTTGCAGTGAACAACGTGCTCA	
       201	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
         4	    28	 100.0	    33	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                 	       

# Left flank :   AACGCGATCACAGAGTTTGG
# Right flank :  GTACTCTAAAAGTTAATATTCGTCG

# Questionable array : NO	 Score: 5.86
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [16.7-28.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.24,0.27   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//


Array 1 2080-1932 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEMFY010000037.1 Vibrio cholerae strain Vc3019 NODE_37_length_6058_cov_108.904029, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
      2079	    28	 100.0	    32	............................	GTTACACGTGGTCGCGATATGCGCCCGAGAAT	
      2019	    28	 100.0	    32	............................	TTCAGCGCGACTCAACATTGCGAGTAAATCGG	
      1959	    28	  96.4	     0	........................A...	|                               	
==========	======	======	======	============================	================================	==================
         3	    28	  98.8	    32	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                	       

# Left flank :   TGGGTCCTACGACCAAGTGGCAACCGATATATAATTAAGGCAAAAGATAAACCAGAAATTAATAAACAGTTGGCTAGCCTTGGGATATCTAAAGCTAAACTGTTCCCTGAAATCGACATGGTTTCTCAGTTTATAAAAGATGATCTTGGTTTGCAGATCGAAAATTATGCAAATGACGCTCCTTTAATTCTTGGTAAACCTAAGTTGTCAGATTGGTTGTAGAAATTCATTTAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCATTGGGCTGCGGTGGTTACGGTTGTTCTGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATC
# Right flank :  TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGCAGTTTTTTGGGCAATAAAAACCAGCATTTTCAGCTGGCTTTAGAATTTGCTTTATTGAGCTGCTTTGACTCGGATCTTGCTTTTGGCAACGTTTGCCATATTCAGCGCTGCAATTGCAGTTTTTGCTTCTGAAGCCTCAGGCATTTCGACGAAAGCAAAGCCTTTCGATAGACCGGTTTCTTGGTCTAAAACGAGAGTGCATTCGGTAACAGAGCCGTGTTCAGAAAACAGTTTACGAATGTCGTGCTCAGTTGTAGTGCGAGCAAGGTTGCGAACTAAGAGTTTCATAGTTGTCCGTTGATGTAGAAATAACGGTGAGGATTGTCTCAATAAAGACAGTGG

# Questionable array : NO	 Score: 5.30
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//