Array 1 553310-555905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022523.1 Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 553310 29 100.0 32 ............................. CAATTAAGCCACCAGCCGATTACAAGGAATAC 553371 29 100.0 32 ............................. ACATTAAAGAGGTTGCGCCATCTGATGTGAAA 553432 29 100.0 32 ............................. GTGGTCGCGGAAAAGGCTGCGCCTGTAGTGCG 553493 29 100.0 32 ............................. TTACTTCAGCAATGATAAGAGTACACATTGGT 553554 29 100.0 32 ............................. CAATCATTAGCGCCATGAACTTAACCGCTATA 553615 29 100.0 32 ............................. GTAAACCCCATTCATTTAATACCACCCGAACA 553676 29 100.0 32 ............................. GGTTGTATATGACTCGCACCGAATTTGTAAAC 553737 29 100.0 32 ............................. CGGGGTTATAATGATTGAAATCAACAAATTAG 553798 29 100.0 32 ............................. GCATTGATAAATAACAGGAATTAAATTTATTT 553859 29 100.0 33 ............................. GCGAAATCAGGGGGAATCGTTACAACATTTCTA 553921 29 96.6 32 ............................T TTTGATTGGTGTAAGCCCTAAGCTCCGTTGAT 553982 29 100.0 32 ............................. TTCAAAAATAGGCGCTGGAGCTTGTTCTTTGG 554043 29 100.0 32 ............................. CAACTAAATCACGGTAGTTTGAATCCGTAACC 554104 29 100.0 32 ............................. CAACTAAATCACGGTAGTTTGAATCCGTAACC 554165 29 100.0 32 ............................. ATGTTGTATTGTTGTTGATTTCTCGATATCTA 554226 29 100.0 32 ............................. CTACCAACGTTTACCGCGATTACGGCCAATGT 554287 29 100.0 33 ............................. CTTGTATGTTTTATGCCTATTACTTTACAGCGC 554349 29 100.0 32 ............................. CTTGACCATCATTGCTTATCACGATGGAGAGG 554410 29 100.0 32 ............................. TTATATTCAAACGGCTTGTGGCACTTGGCATG 554471 29 100.0 32 ............................. GTTATTGGGTTGGGAACATTTCCTGACACAGA 554532 29 96.6 32 ............................T AGAGGGGGCGACTGTATGGGTTGGTAACAACT 554593 29 100.0 32 ............................. GGCAACCCCTAACGCGTCCTGAATTAGCAAAG 554654 29 100.0 32 ............................. CATTCAGCCAAACTAGAAATAGGCGCATTTGT 554715 29 100.0 32 ............................. AATATATCGAGCCGCCCACGGCGGGTACTCGC 554776 29 100.0 32 ............................. GGTGGTTTATGACCAAAAGGCGTACGCTCATA 554837 29 100.0 32 ............................. TTACCCAGTGGCAACACCGCTGAGCTGTACAC 554898 29 100.0 32 ............................. GTGCAGTTGCACATTGGCGGTTGGGCTGAGTA 554959 29 100.0 32 ............................. AATCTTGAGGCAACATATTCACTTTTGGTGAA 555020 29 100.0 32 ............................. GAAATTCTTTCCTGTGGCACTTGTAATAGATT 555081 29 100.0 32 ............................. AACTGCATTTCTTCTACGCTTGGTTGTTCAAA 555142 29 100.0 34 ............................. TGGAGTGAAATCGTTTTGCATACTGCTTTGCAGC 555205 29 100.0 32 ............................. CAACTAAATCACGGTAGTTTGAATCCGTAACC 555266 29 100.0 32 ............................. TGCACGACCTCTACAAATCCACAGCGACCAAA 555327 29 100.0 33 ............................. CGGTTTGCGTTGTAACTCTGCAAAATGTCAGGC 555389 29 100.0 32 ............................. CCGCCAGAACCAACACAAAAGGTAACACGAGA 555450 29 100.0 32 ............................. TCCAGTGCTCTCACAAATGCACGCTCTCAGTA 555511 29 96.6 32 .............A............... CAGCGTGGTAGCTCACTACTTTTCTGCAATCC 555572 29 96.6 32 .............A............... CACCTGTTACCACACAGCCGAGACTGCTGGGT 555633 29 96.6 32 .............A............... CGTATTTTAGGCGTTGCGTGGGATTCGGTTGT 555694 29 100.0 32 ............................. CTAGTAAACCTGAAAACATTACTAATTCACGA 555755 29 93.1 32 ........T....A............... ACTCGGAACTACTACATAAGGTTTTAATTGAA 555816 29 96.6 32 .............A............... CGTAGCGTGTTCAAAACCCAGTATCTCGACCA 555877 29 89.7 0 .............AT.............T | ========== ====== ====== ====== ============================= ================================== ================== 43 29 99.1 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : AGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGCGAAGCAATCGGGTTTGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGTCTTTATCTTGAAGACTTATATGTATCACAAGATAAGCGCGGTGTTGGTGCAGGTAAAGGGATCATGAAATACCTCGCAAGACTTGCACTACAAAAGGATTGCGGTCGCTTTGAGTGGGTGGTACTTGACTGGAACAAACCATCAATCGACTTTTATGAAAGCATCGGTGCTAAAGCACAAAACGAGTGGATTATTTATCGCCTAACAGGACAGGAACTCATCGATTTTGCTGAGCAGGTATAGTGAAGTTTATTAGTCTGTTGGCTATACATTATTTGAAGAGAAACCCCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAAAATTGCAATGGTGATTTTTGTTAATAGAAACAGTGACATATCTTTAGA # Right flank : TGAGTTATTCAGGTCTGAATCATGTGCTGTATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTTAGCAGGCTGCGAAACTGTGTTTTGGTCCTACTTCGCCCCCGTACGCACGGGGCTAACCAGTAGAACATTTTAGTAGGAAAGAGGCGGTGGACAGCTTGGCTGGAAGTGGTGGCAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCAATAGTTGATTATTAATCTATCATCAAAAAAATGCTAGCGTGATCTCTCTGTCAGTTTGTCTCAGGTCAATGACTTACTTTGTTTGTTTTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGTATTGTTTTGGCAGGGAGAAATCCAGACCGGTACTTTCCAGAGCAAATTTAAGCTTTCAAGGCCCAGCGCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 566877-567637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022523.1 Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 566877 29 100.0 32 ............................. TGAGCGAAACACTCGCCATTGATGCTACCGAC 566938 29 100.0 32 ............................. GAGATAGTTTAGCGCGCAATTGTGTTTTTAGA 566999 29 100.0 32 ............................. CATTCAATACAGTTGCACACTATGCAGTACGT 567060 29 100.0 32 ............................. ATTTATTGAAGTGGAGAGCAACTAGCTATGGC 567121 29 100.0 32 ............................. TTAAATTTAACTATACTCAAGCGCTGGCGATT 567182 29 100.0 32 ............................. TCACCACATATACAATTTCATCACCCATTTTG 567243 29 100.0 32 ............................. CTACAGCTGAGTTTCTTCATATTACTGAGAGG 567304 29 100.0 32 ............................. GAATTAACATGCAATGCGTCACTATCACCGAG 567365 29 100.0 32 ............................. TGACCACAACCACCGGAAAGGCAAACATAGGA 567426 29 100.0 32 ............................. TCATGATTCGGGCATTAAAAGAGGTGTATTGA 567487 29 100.0 32 ............................. CATCTCAGATTCTTTCAGTGGTGACTTTTCAA 567548 29 100.0 32 ............................. TGTTTGTTGTGCAGTGAGCCGTCGACATATGT 567609 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : TCCATAGGCGACGAGGGCCATCGCAGCGGAGGGTCACTATGAGTATGTGCATGGTTGTTACTGAGGCGGTGCCACCGAGGTTAAGAGGTCGTCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGTGTGTATGTAGGTGATGTGAGCAAGCGCATTCGTGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCTGTCGATTTTCAGGGCCTGAGATTGGTGAAGTATACGCCCAGAGCAAATGATAATCCGGGAGCTGATTAGCGAACGCCCCACTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGTGATTAAGATTTATACCTCATAGTGAGAGGTGCTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : GTTCTTCAATGTCTTCTGTTTTGAATAAATCATGTGTTCCCCGGTAAGCGTCGCCTGAACCACACCTAGCTACTGAATACGCTCAGCCTATAAAGTACAACTCTGACCTCAATTCGGAGCTGACCATGCCTAAACACAAAACCGCAGAGCAATGGCTGCAACTTATCGAACAACAGGAACTCAGTGGTTTGTCTGTCACTGACTTCTGCACGCAGCACAACCTTAGTACCAAGTCTTTTTATAATCGCCGAAGTAAACTTCGCACTAAAAAACCACCTGAGTCATCTTTTATTGCCGCTAAGCCTGCTGCATCTGAGTCCGTTTCTCTGCCTGAGTTGTTACAGCTCAAGCATGGTCAGAATACGGTGTTGTTGCCATCAAACACAGATGCTCTGTGGTTGGCTGCACTGCTCAGGGCGCTGTCTTGATCTGCTGGCACAATGAGTCTGTTTACTTGCACCGCCAGCCAGTAGACTTTCGTAAATCCATCAATGGCCTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 569991-572889 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022523.1 Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 569991 29 93.1 32 AC........................... AACTAACCCCGACGGCATTTATGTAATGGGTA 570052 29 100.0 32 ............................. CGCTTCAGTTTGCTAATGATGCGAGTCGGTCT 570113 29 100.0 32 ............................. TCTCTTTGACCCAAGCGCAATTACCCAAGCTG 570174 29 100.0 32 ............................. GGTTTAATGTCATGCAATCACTGCCTGAAAAG 570235 29 100.0 32 ............................. GCATTCCTCAATGTCTTGTATTTGACCATGAA 570296 29 100.0 32 ............................. AATTAATTAACGAGCTATCAACTCCACGTAGG 570357 29 100.0 32 ............................. TGTTGTTTTTAGTTTTTTTTGGTGTTTTTTGG 570418 29 100.0 32 ............................. GACGGTGAAATGAGTGATTTAATAGAAACGAT 570479 29 100.0 32 ............................. GCAGAAAACCAATGACACTAAACCAAATAGCA 570540 29 100.0 32 ............................. CGTTAGGCTTAGCTACTAATAGCAAAGTCACA 570601 29 100.0 32 ............................. TGCATTAAACTCATGCACTCCAAACCTCTCAA 570662 29 100.0 32 ............................. ATGCACCGGTTGAAGATAAGCAAGAAATTAAA 570723 29 100.0 32 ............................. CGAATCAGGATAACCATAAGCCGCCGAGTCAT 570784 29 100.0 32 ............................. TATGTCTGACAGGGAAAACGGTTTAACTGAAC 570845 29 100.0 32 ............................. TATTCGGCGGTGATGTTTTTGTCAGACCCAGC 570906 29 100.0 32 ............................. TAACGCGCTTTGTATTTATCGCTGTATCAACA 570967 29 100.0 33 ............................. CTGTAGCTCAATCTCAGCATAACGTGCAGAGTC 571029 29 100.0 32 ............................. CACGGTGTTGATGAATGCACGTTCGTTGGCTG 571090 29 100.0 32 ............................. TTCTGGGTGCTGTTCACTCGCCATAGCTTGCT 571151 29 100.0 32 ............................. TCGATGATTGAACCAACCATCACCTTTTTTGA 571212 29 100.0 32 ............................. CTCCCCTAAATTCATACCTTTGCAGCTTTCTT 571273 29 100.0 32 ............................. TTTTTGATTTGTGCAGGCGTGACACCCTCTAA 571334 29 100.0 32 ............................. TCACTCTTTTGAATAGCCATTTACTTGCCTCC 571395 29 100.0 32 ............................. GTAATTTGCTCTTGGCAATCAAACGGAATATT 571456 29 100.0 32 ............................. CCTTTTAGCGCTTCGCGGCAACGTACACCGCG 571517 29 100.0 32 ............................. CGATGTTAGTACTAACCCTACTATGGCTATGA 571578 29 100.0 33 ............................. TACTTCTTGTAGGTCGCCATAGCCACCCCATTC 571640 29 100.0 32 ............................. TCCTCCAGACTGGATGAGGTAAACGATAAAAT 571701 29 100.0 32 ............................. GGGATTATAGTTCGGCTGATATTACTGACGAA 571762 29 100.0 32 ............................. TAGCTGTTGGGCTTCGTTCATCTTGGGTGCTC 571823 29 100.0 33 ............................. ATGAAAAAGAGTTTACTCAAATACAAGATGAGA 571885 29 100.0 32 ............................. ATACTTGAGATTGCAGGAACGGGCGTCACAGA 571946 29 100.0 32 ............................. CACATCGTAATCATAATGGCCTATCCGTGGAG 572007 29 100.0 32 ............................. CAAAAAGCCGCACTCCTAAAACAGCAAGAAGA 572068 29 100.0 32 ............................. CTCTCTTCTGTATTCAGCATCTCTCATTGCTT 572129 29 100.0 32 ............................. CTGGCAAACCATAATGAACTCACCCGTTTTCT 572190 29 100.0 32 ............................. GCCAGCGCCACCACCAAGGCCCGCGATTCTTA 572251 29 100.0 32 ............................. TACGTAAGATGCGAGCGCCTGCTCTAATACCG 572312 29 100.0 32 ............................. ATAGTTTCGTAAGTTAGGCCAATCGGTAGACT 572373 29 100.0 32 ............................. ATGGGGGACGATATTTTGCGCTTAATGCGTAT 572434 29 100.0 32 ............................. ACATTAACGATATTGTTGAGACGTACAATCCT 572495 29 100.0 32 ............................. GAAAATCACTATGAAATTAGTATCTAAAATCA 572556 29 96.6 32 ................T............ GAGGCTGTTTTATGTCTATTCCAAACGTGGAT 572617 29 100.0 32 ............................. GCGAGGAAAACAGCGAAACAACGAGCAGCCAA 572678 29 100.0 32 ............................. CCATGAATGCCGCCGCTCAAATTGGTGAGCAG 572739 29 96.6 32 ............T................ GCCTCGTGATTTCAATTCCGCAACATTCAATC 572800 29 93.1 32 .........A..T................ CGTGTTAATGTTGATGCACGCGACCAGACTAG 572861 29 86.2 0 ........T......T..........T.T | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.3 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : GCGAACTGGGCGCTCAACCATATTCAAAAGTTATATCGAGTTGAGACTGCAAACAAAACAGCAAGCGCAGAGGAGCGGCAGGCTGCACGGGTACAACAAAGCGCACCGCTGCTGGCCCAGTTTAAAACCTGGTTAGATAAATCAGCACAAACGGTGGTACCAAAATCGAAGCTGGGCGAGGCCGTCCACTATACGCTAAGGCAGTGGCCGAAACTCATTCACTACCTCGATGACGGACATCTAAAGATAGACAACAACCGGGCAGAGCGCGCTATCAAACCGTTCGTCATAGGGCGAAAGAACTGGCTGTTTAGCTTCACCACAAGTGGCGCTGAGAGTAGCGCAATCCTCTACAGCGTGATCGAAACAGCCAGAGCAAACGGCCACACCCCATTCGATTATGTGATGCATTGCTTAAACGAATTAGCCCAGCCACAGTACGATATCGACAGTTTACTGCCCTGGCATGTTAGCCTCTAGGTGTAGTTAGCCGTACGCTT # Right flank : TGAGCGACTCAGGTCTGGACCATGTGCTGGAATTCGTCCGTGAAGCAGCACCAGATGCTCACCTCATTGAGCGGTGAAACAGCGGCGATTCTAGGCTCGCCTGTAATCTCGGGATTAAGTTATAGCCATCATTGTTAGCTAGTTATTTATCCACATGACCTAAATCACGCTCAGGATCTAACAAATCTCTCACCCTTCTTTTGAGCACTTTGGCTTCAGGAAAACCTTCATCCGCCTTTCGGCACCAAATTAACGTATTGTTATAGTAAATTTTGAATACGCCTTTACTTGCTGGCACTAACGCGACTTGTTGTAAATCGTCAGAGAAAGTTGAAAGTAACTCTTGTGCAAGCCAAGTTGCTCGCAACATCCATTGGCAAAGTACGCAGTAATGGATAGTGATGGTCGGTTTTTGCATGAATTTACGTTTTTTTGAAGGCTGTGATGGGATTCTAGCACTGTGATTTATCATATGGCTAGCTTGAAAAAAACGGGGGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //