Array 1 453580-453830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055305.1 Mannheimia pernigra strain 17CN0883 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 453580 38 100.0 35 ...................................... AAGTAAGTTAGTTTGTTCATAAGTTTCTCCGTTAT 453653 38 100.0 32 ...................................... TACCATAACCTGCAAGCGTCGTAGCTGGGGAT 453723 38 97.4 33 ...................T.................. TCTACAACTACGGCATATTTGTTTGTGTCGTTG 453794 37 78.9 0 ............T.......T.A...A.....TT-..G | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 94.1 34 GTCGAAAGACACCGCCCTGCCTGAAAGGGATTAAGACA # Left flank : CTATTTACACTATTTTAAAAGGCAGCGCAGAAAGTTTGGAAAATCGGGTGAAATTTGTGAAAAATGAAGCTGAATTTGCCGAAGAAACAAAAAAAATCTATTCGGAATCTTGTCATCATTTAGGGAAAAGAATTAAAAAGGAATTTTCAATCGGTCATTGTGAAACACCATATATACCATCTTCTTCACATCAATGTTACGAATTATTGATCGAGGAAGAAAATATTGATATTTCCGCTATTTTGCCAGATTTACAAGGCAAAATTTAAGCCTAAGCAAGCGGTCGTTTTTTTGCAAATTTCTGCAAAATACCGACCGCTATCAAATAACTTTAATCTGACTAGCTGATTTATGCTAAAATAACCACGTTCTTTAATTGTGGAGTTTAATGATTTTGATGAAATTATCACCAAATCAATACCCAGCTATTCAGCCTACTGAATTTTTTGGGAAGCCTATTTTTAACATTCTGAAAAATAAGGAAAATTTAGGTATCCGCA # Right flank : GTTTAAACCTGTTTATTATGCGATTCTAGTCCTATAAATTATTGCCGACAGTTTTTGTCGGTTTTTTCTTTTACAAGCGGTGATTTTTCGCACCCATTTTACAAATTTGTATTCTCCTCTTATTTTCCTCATCTCTCCTAAAATAGCGTTATTGTTAAATATTTAGGAGAGAAAAATGTTCGGTTCTAATCGTGATACACAATCCAGATTCGTAGCACAAAACCGTCCATTTACTCCTTACACTTCAAGTGAAATTGAAGCGTTAATTGCTGGTTATGTAGAAGTGGCTGATGATCGTGCTTATAACGGTCGTTGCTTTGTAAAAGCAGGTAAAAAATGGATCCATAACCTAAATGCTCTTCGCAAAAAATTAAGCGATGCGTATGGACGTTATATTGACGATGAAGAGTTAGAAGCAGGCTATCCTGAGGGTTTTGGCTACGATGTCGCAAACTATTACAGCCGCCATAATCGAATGACATTAGCTGAGAACAAGGAAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACCGCCCTGCCTGAAAGGGATTAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1724325-1725215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055305.1 Mannheimia pernigra strain 17CN0883 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1724325 32 100.0 34 ................................ ATACAAGGCATTTTGTAGCAGTATGGGTGGTCAA 1724391 32 100.0 34 ................................ TTTTTATCCGAATAAGTCACTTGCACTGCGTTAT 1724457 32 100.0 35 ................................ GCTATTGTCCTGTCTGCCAATGGCGTAAATCGCTG 1724524 32 100.0 35 ................................ GATATTTTAGCTCGCTACGCTGCGGGTAAGGTATA 1724591 32 100.0 34 ................................ TAGTCAAGAGGTGGGCAGTATTTATAATGAGTTG 1724657 32 100.0 33 ................................ ATCGCAGTATTTCGCAATTTGGTAGAGCTGGAA 1724722 32 96.9 34 C............................... AAGACAATTCGTAAAAAAGGAGGGTATATGACCT 1724788 32 100.0 34 ................................ GCATCCTTGATAAACTTCAAAATCTCTTTCTTAT 1724854 32 100.0 35 ................................ TGCACCGTCTGAAAATCTAAATAGATGCTCATACT 1724921 32 96.9 35 ...........T.................... CAGTTATCTCAAAGGATTGCACGCTTCTCAATAAG 1724988 32 100.0 34 ................................ GCCACCCCTAAGCGTGCGGTTGCCTCTTTGGTCA 1725054 32 100.0 33 ................................ AATTTGGAGACATTCACAATGGCAAAAATTACA 1725119 32 100.0 33 ................................ AATTTGGAGACATTCACAATGGCAAAAATTACA 1725184 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 14 32 99.6 34 GCAGCTACCTACACGTAGCTGTGAGTTGAAAC # Left flank : TAGAATTATGATGATGTTAATTACTTACGATATTTCTTTTGACACCCCAGAAGGGCAGAAGCGCCTGAGGCATATTGCCAAATACTGTTTAGATTACGGCATCAGGGTTCAATATTCTGTATTTGAATGCGATGTCACACCCGACCAATGGGTTAAACTCAAACAGAAATTACTCTCCACCTATAATCCGGAAACGGATAGTTTACGTTTCTATCATCTCGGAAGCAAATGGAGAAACAAAGTGGAGCACCACGGAGCAAAAAAAGCGGTGGATATGTTCAAAGATGTTCTAATTTTATAGATTTTCTGTTATCGCTAGCTACTTGTTCTCATCAATATATAGGGAGGCTAGCGATTTTAAAAGTTCTTTAATAATTAATTAGTTAAAAATTTTTATAGCATATTACTGAATGTGCTATACTCAAATCACCCCCTGTAACGACTGCTTTAGCGAAAATCAGGTAATACAACCTGATAGCATAACGTATTTTGATATAGGG # Right flank : CACTGGTTCGGTAAATCGTGAAAATTCAGGATGTAATGGTCTAACCCATAGCAACAAACCAAAGACTATTTTTGATAAACTCTCTCAAAATGGAGACCAGCAAAATGGTTAAACTTTTTACCCCTGAGTATAAAAAGCAATGTGTTGAAATGGTGTTAGACGGCAAACATAGCGTCAGTCAAGTGTGTAAAATGATGCGAGTCAGCCAATCTGCCCTAAATCGTTGCTTGAATCGTTAGAAGCGGCAATTTCTCGCCGAGCAGCGGGGAATTCAGCGTTTGCGAGAAGGCATTTCCCACTCACAACTGTCCCGTTGTTTTTCGTTGAACCGTTCTACCAGCCATCGTTGAGAAAAATCGTCGCCTAATCAAACGTTGATGAGCTTGCAGGAAACGTTGCTATCCGCCTTTGAGGCAAGCGGTGAAACCTATGGCTCACGGCGTGTATCGCAGGCGGTGACGGATTTAGGAGTAAAAAGCCACCTTCATAGAAGGTGGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTACACGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //