Array 1 88369-89434 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGX01000021.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2127 NODE_21_length_89480_cov_4.67629, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88369 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88430 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88491 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88552 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 88613 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 88674 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 88735 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88796 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88857 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88918 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88979 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 89040 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 89101 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 89162 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 89223 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89284 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89345 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89406 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : AATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97112-96307 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGX01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2127 NODE_18_length_114013_cov_4.87583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 97111 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 97050 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 96989 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 96928 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 96867 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 96805 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 96702 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 96641 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 96580 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 96519 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 96458 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 96397 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 96336 29 96.6 0 A............................ | A [96309] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114005-113244 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGX01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2127 NODE_18_length_114013_cov_4.87583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114004 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 113943 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 113882 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 113821 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 113759 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 113698 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 113637 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 113576 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 113515 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 113454 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 113393 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 113332 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 113271 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCTTAA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //