Array 1 88074-87234 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGH01000003.1 Actinomadura macrotermitis strain RB68 ARB68_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 88073 36 100.0 36 .................................... GTACGTATGCCACGTTCTGGCCCGGCCCGGGTGTGG 88001 36 100.0 36 .................................... GACCCAGACCGAGGCACAGGCGATCGCCGAGACCCC 87929 36 100.0 36 .................................... GCGCAAAAAGGTGTGGCGCGCGCTGCGCGCACTCCA 87857 36 97.2 37 .................A.................. GCTCTACGACGCCTACAAGGCCGTGCCCAAGCGCATC 87784 36 100.0 38 .................................... GCGGGCGTGCTTCAACACTGTGGACATGGACAACCCCG 87710 36 91.7 36 .................T..T.......T....... GAGGTGCCCGCTCATACGACGGGTCGACATGTGCGG 87638 36 97.2 40 ..........T......................... GTGGGTGGGCGGCGTCACCCAGGCTGTTACCACGACCCAG 87562 36 91.7 37 T.........T...T..................... CATGGAGATGAACGCGAACGCATAAATGCAGGCGGCG 87489 36 94.4 37 .................A.T................ CAGGCCCGCGCCGCGCGGGCACTCCTGCTCGGCGGTG 87416 36 94.4 36 ..............T.....G............... CCACATGTCGAAGACGGCACCTTCGGCCAGGCACCA 87344 36 88.9 39 ............T..G.A......C........... CTGTGCCGCGAGAGTGTCCTGGCGGGGGGAATTGAGTTC 87269 35 77.8 0 ...........T...G.C...........-..CACA | C [87239] ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 94.4 37 CCGACACCGGCCCTCACGGACCGGTCCTCATTGCGG # Left flank : TGGCTCCTGGCCGGCGGCGCAGATCTCCAGGTCGTCAAGGAACGCCTCGGCCACCGCAAGATCTCCACCACCGAGCGCTACCTTCACACTCTCCCCACTGCCGACGAGACCGCCCTCGAAGCCCTCAACAAGATCCGCAATACCTTCGCCATCACAGACCTCGACCTCCAAGGCCAACTCCAGGAGGCCCAAGCCAAGATCGCCCAACTCCAAGCAGCCCTCGCCGACCAGCTCCTAGTCGAGCGCGCTAACCCCACCCGCAACCTGCGTTCGCTGTAGTGGACCATCCGACCATCCGACCATCCGACCATCCGACCATCCGACCATCCGACCATCTGCCGTCCGCCCCGTAGGGCATGATCTGGATCGACTTCGGAACCTCAAGTACCCATGAAATCCCTGGGAGGTTCCGAAGCGGAGACGACCGCAGTCGGGCATAAAACGGGCAGCCACTATGGCGAAGGGTGGGTACAAGCGGTAATCATGCCTGTTCAAACAGG # Right flank : GTTGAAACCAACGGGCTTGGGCTCCAGGTGACGACGCCTTCTGCGTGAAGTTCGCTAAAAGTGTCGGCAGTGTGGCGTAGCGTCTCGTCGTGTGATCGACGCCATATTGAGCGGAGATGGTCTGATGGCTTCACGAATGGTTGAGCGGCTGCTGGCGGCCGTGGGTGAAGATCGGGTGGACGCAGGGATTGCGATCCACGGTGTGTACCGGGCAGCCGCCGACGACAAGATCATGCCGCCGACGTTCCCCGACGGGCCCTATCTCTTGGAAAAACGCCGCGTCGACGGGCAGCCGCGCGAGACGGTCGTGCTTGACCAAGTGCCCTCGCAGGCCAACCGGATTGAGGAAGCCCTTCTTGCCGCACGAGACAAGGGACGGATCGAACTTCCGCTCTTCGAGCTCCAAGCCGAGACAAGCCGCGGGCTGGTGCGGCTGACCTCGTTGGAGTTCCCACATCGCTACGCGGACGCCTACCTGCGCGACAGTCACGTGGACGGTG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGACACCGGCCCTCACGGACCGGTCCTCATTGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1157945-1153253 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGH01000002.1 Actinomadura macrotermitis strain RB68 ARB68_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 1157944 26 85.7 33 ...........--....A.....C.... GACCTGCCAGGACGCCGACACCTTGTTCGCGGC 1157885 28 96.4 33 ..........................C. CTCGGCCTGGTCGACCGTCGCGGTGCCCGACCT 1157824 28 89.3 33 ............GG..G........... CCGTGAGTTCCATGTGCCTTGCCTTTCCGGACT TA,A [1157805,1157809] 1157760 28 96.4 33 ............T............... CGCGGGTAGCAGCGCGACGGGCGCCGGTTTCTG 1157699 28 96.4 33 .......T.................... GTTCCGGCTCCTGCAGCGCGCGGTGGACCTGCT 1157638 28 100.0 33 ............................ CCTCTACCGGATGTCGGCTCAGCTCACCGCGAG 1157577 28 100.0 33 ............................ CGACCAGGCCTTGACCGGGTCGCCGTAGCGGGC 1157516 27 96.4 49 ....................-....... CCTCCGCGTGCTCTGCAGCTGGCACCACGCCCGCTCGGCCCCGCGCCCG 1157440 28 96.4 31 ..T......................... CGCATCTGGCGGACGGACGGCATGATCGGCG 1157381 28 96.4 33 ..G......................... GCCGTTCTGGCCGTCGCTGATCGCGCACAGCCC 1157320 28 100.0 33 ............................ GTACGGCGGGTACCACTTCGTGGGCGACCCGCG 1157259 28 100.0 33 ............................ TGCGCCTCAAGGCCGGCCCGCAGACCTCCGACG 1157198 28 100.0 33 ............................ CGGCGGCACGATCACCACCACCGGGTCGGGCGC 1157137 28 100.0 33 ............................ TCGCTGGTGGCCCTGCTGGTCGACGTCGCCTCG 1157076 28 96.4 33 ............A............... GCGGGTGGCGTAGACGTAGACGTCAGGCGTGTC 1157015 28 96.4 33 ................T........... CGAGTGGACCTCCAAGCCCGAGAACCAGGCGCG 1156954 28 100.0 33 ............................ GGCATGGCGCTGGGCATCACCGGCTCGGCCGGG 1156893 28 100.0 33 ............................ GACTGCGAGCGGTACGAGCGGCATCTTGTACGC 1156832 28 100.0 33 ............................ CGCCATCACCGACGCGCTCGACGCCCGCGCCGC 1156771 28 100.0 33 ............................ CCTGGACGTCCACGCCGGACGGCCGCGGCTGTC 1156710 28 96.4 33 ..T......................... TCAAGTTCGGTTGTTGGTGAGGTCGCGGAGGAC 1156649 28 100.0 33 ............................ ATCTGGCGGACGGACGGCATGATCCCGGCGCCG 1156588 28 85.7 48 ....................A...CGC. CGCGGGAATGGTTCACGCCCGCGACGGGTGGTGAGCCTCCCTTGACCG 1156512 28 92.9 33 .................A......A... CGACCAGGCCTTGACCGGGTCGCCGTAGCGGGC 1156451 28 100.0 33 ............................ GACGCTGGAGAACCTGCCCAACATCCTCACGGT 1156390 28 96.4 33 .................A.......... CGTCCCGCTCGCTCGCCTACTCCCCCTTGTGCG 1156329 28 89.3 33 ..GA.......A................ CGGCCGTCCGCGGAAGCTGAACGTGATCGTCTC 1156268 28 100.0 33 ............................ GTACGCGCTCATGCGGCGTGCGGTGGACCTGCT 1156207 28 96.4 33 ..............G............. GCCAGAAGGCCCCCGCGCCGTTGATGCTTGGCG 1156146 28 96.4 33 ........T................... CCTGCTGAGCGCCGGCCTGTGGGACATGCTCGT 1156085 28 96.4 33 ..........................C. TGGGCATGTACGCCCGTTCGGCGCCCTTCTACC 1156024 28 96.4 39 ..........................C. CCTGGCCGCCAACGACGTCCGCGCCGCCCTCGACTCGGC 1155957 28 85.7 33 .C..CG....................C. TGGCGTTCAGTACCGTTCAGCGCTGTTCAGTGG 1155896 28 96.4 33 ..........................C. CGCGCCCAGGTAGGGCGTGCCGCCGATCGACAC 1155835 28 92.9 33 .........A................C. GCCACCAGGGGCGGGCCGCCCTCATCCCCGCGA 1155774 28 96.4 33 ..........................C. CCGGAACGTCACGTCGTCGCTGAGCAACAGCGC 1155713 28 96.4 33 ..........................C. GCGCGCCTTCGGGCCCGACCTGCAGGGCGTCAC 1155652 28 92.9 33 ............T.............C. GAACTTCGAGCGACGGGGCTCCTGCCCCTGCCG 1155591 28 100.0 33 ............................ CATCTGGACTGGTGCCGCCCCCGCCGCGCAGGT 1155530 28 100.0 33 ............................ GCACAGTGGGCCGACTGGTGACGCGGGGTTCCC 1155469 28 100.0 33 ............................ CTCCAGCACCAGGTCACGCTCGTGGTGGACGTG 1155408 28 100.0 33 ............................ ACCGCGCAGGTCCGGGCGGAGCGGGATGTACGC 1155347 28 100.0 33 ............................ CTACGCCACCCTGGCGCTGCGCAACCGCGGCGG 1155286 28 96.4 33 ......T..................... CCGTCCCTCGATGGGGGAGGGGTCGGTCTCGCG 1155225 28 100.0 33 ............................ GACCTGCAGGTTGGCCGACTTGGCCCCTTCGAA 1155164 28 96.4 33 .............A.............. CCCAAAAGGACATCGAGACCCGTGCCTAGGACG 1155103 28 100.0 33 ............................ CTGCGTGCCCGAGTCGAGCACGGCGACGTCGTG 1155042 28 100.0 33 ............................ GTCGGCGGCCGCCGCGCCGCCCACGCTGAAACT 1154981 28 100.0 33 ............................ CAGTGGTTAATCCGTGGCATCACACGTGCTTAC 1154920 28 100.0 33 ............................ TGCGGCCGGGGCCTGGGGATCGTGGCGAGCCTC 1154859 28 100.0 33 ............................ GACCCTCGACTTCGGTAGCGCCCCCGCGGCCGG 1154798 28 100.0 33 ............................ CGGTTTCGTGGTCATCGTTGTCCCTGTCGCAGA 1154737 28 100.0 33 ............................ TCGGCGAGGATCTGCGCGACCTGCGGAATGGGC 1154676 28 100.0 33 ............................ CTCAACGCGGGTGCCGTGGATGGTGACGGTGTA 1154615 28 96.4 33 ..............G............. TCAGTCGCTGGGTAAGTATGTGTCGACCACGGC 1154554 28 100.0 33 ............................ CGCGAACCAGCGGCTGCACTGGGCACCCCGGGC 1154493 28 96.4 33 ...........................T CTCCTGCAGCCCGGCATGCCGCCGGCGCCCGCC 1154432 28 85.7 33 ...A....T....A....A......... GAGTGACGGGTCCGGCACCCGCGTCTGGACCGG 1154371 28 92.9 33 ...A......................C. CAGCGCGGATTCACGGACCGCGATCCCGCCGTA 1154310 28 92.9 32 ............T.T............. GGGCGGGTGGCTTAGCACGACCCGAACGCGGC 1154250 28 100.0 33 ............................ GCTGCCCGTCGCCTCGGTCACCTCGGTGTCCGA 1154189 28 100.0 33 ............................ CCTGATCACGTTGACGCTCCGGCCGTGGCTGGT 1154128 28 92.9 33 .....A.........A............ CCGGGTGGAGTCCGCCGCCGCCCGCGGCGGGCA 1154067 28 100.0 33 ............................ CGTGCGGCTTCGCAGGTGCAGGCGCAGGCGTTG 1154006 28 100.0 33 ............................ GCGGTAGTCCGACTGCCGCACCAGCACGTCGTC 1153945 28 100.0 33 ............................ GTTCTACCGGGACGAGGACGAGGGCGAGACCGG 1153884 28 100.0 30 ............................ GCGGACCCCCCAGGCCAGGCCGCTGATCGC 1153826 28 100.0 30 ............................ GCGGACCCCCCAGGCCAGGCCGCTGATCGC 1153768 28 100.0 33 ............................ TCTTCTGCGCGCCATTGGCGCTCATGGCGGTCA 1153707 28 100.0 33 ............................ GACGCCCCCGCTCGTGTGACAGTGGCCCGGGGT 1153646 28 89.3 33 ............T.T...T......... CCTGCGGACCATCTCGATCCAGCTCGCCCTCGA 1153585 28 96.4 33 ..............T............. CGCGCCCACGGTGCGGATCCGGATGGCGCCTGA 1153524 28 100.0 33 ............................ CCTCTACCGGATGTCGGCTCAGCTCACCGCGAG 1153463 28 100.0 33 ............................ CCGGCCGGCGCCCTGGCCCTCTCGTCCTGTCGC 1153402 28 96.4 33 ............G............... GCGCCGCCGCCGTGGGTGGAGCAGGCCCGCGAC 1153341 28 100.0 33 ............................ GTCGGAGCTGGCGCGCGAGCTCACCAGCAGGTT 1153280 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================================= ================== 77 28 97.2 33 CTCGGCCCCGCGCCCGCGGGGATGGTTC # Left flank : ATCGGCGCCGACACCGACACCGAACGGCTCGCGCTCCGCCTCCTTCCACGTGTCTCTAGCTCGACAACTCATAAGGGGCTGCGCATCACCCGCGCGGAGATCAAGGGAACCCTCACGGTCACCGATCCAAAGGCCTTTGTCGCTGCCCTCACCCAGGGAATTGGCCACGCTCGTGCCTACAGTTGCGGACTTATCCTTATTCATTGATTCCTTTTATCTAAAGCAGCATAGTTGCCGGATTCGCAACATGATCGCAAGCCGATCCGCCTTGGACTGAAAGTTATCGGTGACCAAAGAAATCAGTCGCCGTACCGCATTCGCATCATCAGGATCAACCATATGAAAATGGCCGCTATCGACAGATAGCTCCAGTCGGAAACCCGACGGGCGCAATTAAACTGGAAGCCAGGCTGCAGCAAACAGAACAAGCCCCAGCGAGTCGCAAAATCCAACTTAATTAGGATATTTCTTCTCTGCTATAAGCCCGCAGGTCAACGAGC # Right flank : CTCGTCGGTGACAATGTCAGCTCAAGCATCTCCGTGCACAACGCATGAGGGTTCGTCGGCGGGGAGCCGGGGCCAGGCTTCCGAATGCGGCGAGGCGGTCGAGGAGGAAGACGCGGTCGCCCGCAGGCAAGGCGTGGGCGCCGACCATCCTCTTCGCAGTCCGAGTCACCCACCGATCGCTACCTACAGTGACAAACGCACCCACGCTTCCACGGCGGATGCACAGCCCTCTAGAGGGTGCGACTTCCCTGCACGAAGCCAGGACCGCGCCAGAATCTCCGTCTCAGTTTCCGTCTCAGTTGTGGCTGTACAGGGGTGTTCAGGGATGTTCAGGAGCGTGCGGAGCATCGAACTTTCTGCACGTCAGGGACGGTGCCGGATCCTGGCAGGCCATGATCCTCAGAATTGGAAAGCGTGTTGGGTTCACGCCCTCACGAGTTCGAATCTCGTATCCTCCGCTCGCCTGACCAGGCAACACGAGGCCGGTACCCCACGGGGTG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCCCGCGGGGATGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //