Array 1 12888-13156 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGX01000039.1 Streptococcus sobrinus TCI-352 contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 12888 24 100.0 38 ........................ TAGCCGTAGTCTAGCGTAGACCTTGTTTGACTAAGTTT 12950 24 100.0 37 ........................ TTAATGATACGGTGCTTTTCATTTTCCCGTGTAGTTT 13011 24 100.0 37 ........................ TAAAAGAAATGATGTAGATACGTTACTCGAAGAGTTT 13072 24 100.0 37 ........................ TGGGGATAATATCGCCTTTAGTACAATCGGTCAGTTT 13133 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 5 24 100.0 38 TACCCGCACACGCGGGGGTGATCC # Left flank : ATGAACATACTATCATAGAAATTGCTGCTGTTAAAGTTAGTGGCTTACAGATAGAAGAATTTGGCTATCTTATAAAATATGATAAAGTTTTACCGAAAAATATAGTCTCTCTAACGGGAATAAGCCAAGAACTTTTAAATCAGAATGGAAAAGATATTCAAGTTGTACTTCAGGAATTTCTAAATTTTATTGGAGATTTTGACCTTGTTGGTTATGGAGTGGGATTTGATATTAAGTTTATCAATAATGAGTTAAGAAAATTGGGCTATCCTTTATTGGAAAATAAAGTACACGATTTGATGAAATATGTTAAAAACGAAAAGTTGTTTTTAGATAATTACAAACTTCAAACAGCCTTAAAAGCATATGGAATTGAAGGAAAAGTGCCTCACAGAGCTCTCCCGGACTCTCAACTTATCTATCAGCTGTCTACCAAAGTGAATAAATTTTTGAAAAGGATCAATCAGAAATAGCGGTTTTATTGGGATCTTTTAGTGTTT # Right flank : T # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9813-9606 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGX01000065.1 Streptococcus sobrinus TCI-352 contig00065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 9812 24 100.0 37 ........................ TCCCATGCTCTGAATTTTGGTATGATTGTGAAAGTTT 9751 24 100.0 37 ........................ TATTTCCTCTCGGCCAAAGCAGTGAAACGGTTAGTTT 9690 24 95.8 37 ..........T............. TGGTTTTGGGGATGCTAACTGGTACGAATACTAGTTT 9629 24 75.0 0 ..........G.....T...GCAT | ========== ====== ====== ====== ======================== ===================================== ================== 4 24 92.7 37 TACCCGCACACGCGGGGGTGATCC # Left flank : AACTTGGGGGAAGATGGTTTATGACCGCTTCGTT # Right flank : AGATACTGGAATCTGAGAAATCTTGGTGAAAAAATTAATTTAATTTAGCGTCGTTTATTTACTTATTAGGCGTGCCTAATTTTTGCTTTTCTGTTATAATGAAGGCAAGTAAAAGAATAGAAAAGAGGATTTCTTTTGGAAAGCCCAAAGAATAACTATAGAGCAAATAAGGCCTCTTTGAGCGAGGTTAATCAGAGTGTTGCTGTTCCTGAGACAGCTTCATTTTGGCGAACGCTCAAGGCCTTTATTGGACCGGGTGCCCTAGTAGCAGTCGGTTATATGGACCCTGGAAATTGGATTACCAGTGTGGTTGGTGGTGCTTCTTATAAGTACCTCTTGCTGTCGGTGGTCTTGATTTCCTCCTTGATGGCCATGCAGCTGCAGCAGATGGCAGGGAAACTTGGCATTGTTACCCGTCAGGATTTAGCCCAGGCAACCGCTAATCATCTGCCAGCCTGGTTGCGTTACATCCTATTTGTCATTATTGAGTTGGCCCTGAT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37-548 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGX01000312.1 Streptococcus sobrinus TCI-352 contig00312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 37 24 100.0 37 ........................ TAATCAATCGGTCGATCCATGCCCTAGTCTTATGTTT 98 24 100.0 37 ........................ TGATGAGTACGACGAACGGTACTGCTATAGTCCGTTT 159 24 100.0 37 ........................ TACCATCCCGATGATCCTTGAGAGTATTTCTCTGTTT 220 24 100.0 37 ........................ TGTCAATCCCTATAACAGCAACAACCGTTCAGGGTTT 281 24 100.0 37 ........................ CAGGTGGACGACTTCTACAGATACTATGTATCAGTTT 342 24 100.0 37 ........................ TTGTATCTAACATAGCAGGTCAACTTGAACCTGGTTT 403 24 100.0 37 ........................ CTATAGCTGTTCTGGTTGGTTTGTTCTGTCTGAGTTT 464 24 100.0 37 ........................ TATGGCCTATTACTCGGCAAATGCCAGTTTAAAGTTT 525 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 9 24 100.0 37 TACCCGCACACGCGGGGGTGATCC # Left flank : GCCTGGTTTCCTTCTTTTCGGGATTGGATACTGTTTT # Right flank : TTATATTTAAACCGCTTTTCCAAAAACTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : GTTTTACCCGCACACGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 603-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGX01000308.1 Streptococcus sobrinus TCI-352 contig00308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 602 24 100.0 37 ........................ TATCAGTTTCGAGAAAAGAAATTGGATGCACTTGTTT 541 24 100.0 37 ........................ TTGGGAAAGGCGAAAGAATATTACAGTCTATGCGTTT 480 24 100.0 37 ........................ CCAACAGTAGATCGTTATTTACCACAATCCCCTGTTT 419 24 100.0 37 ........................ TGGTGCTGAAGATACTTGGTTCAAGATGAAAACGTTT 358 24 100.0 37 ........................ TGTTCGCACTAGGGGCTTTTTGTACTCGATTTGGTTT 297 24 100.0 37 ........................ TAGATTTCTCGCATTTCCAAAATGATTCCTTGCGTTT 236 24 100.0 37 ........................ TTGTTTAATGGCAAAGATAGTATTTATCGCTACGTTT 175 24 100.0 37 ........................ TGTTATCACGCATACGGCAAGCCCCCTAAAAAAGTTT 114 24 100.0 37 ........................ GTTCTAATTGCCTGGCTAAATTTTGATCAGCTGGTTT 53 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 10 24 100.0 37 TACCCGCACACGCGGGGGTGATCC # Left flank : GGAGAAGTTCAGCGAAGGAATACGACCAGCCAGTT # Right flank : CCGGGCTTACAGACGCATAATTAAAAAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11628-10880 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGX01000034.1 Streptococcus sobrinus TCI-352 contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 11627 36 100.0 35 .................................... CATATCTTCGATCGACATAAATTTGTTATAAGTCG 11556 36 100.0 36 .................................... AAGATTTCATGGCCACGACTGTATTTAGCGCGAGCA 11484 36 97.2 37 ...............G.................... TCGATTTCGTGCCGTCCGTTACAAAGTCCTAGTTGAT 11411 36 100.0 34 .................................... TGGATTTCTTGTTTGTACAAGCTGAACAAGCTCA 11341 36 100.0 36 .................................... CCCTGACAGAAAACGCCGTTGGCATCGATGTCAATA 11269 36 100.0 36 .................................... TCAACAGTCGCCCTGGTAACGCAGTTTGAATAATTG 11197 36 97.2 36 ........................A........... TATCCACCGTCAACTTTTACCCACTCTGTCTTATCT 11125 36 97.2 34 ...........T........................ ACGTCACTCATATTTTCTAAGTCCCAATCATCTT 11055 36 91.7 33 ......AT.......G.................... TTTCCATGAGGTCGTAAAAATCTGCGTTCATAA 10986 36 97.2 35 ........T........................... CATAAAGGGTCAAGATTTCTGTCATCCGATTCTTA 10915 36 86.1 0 ......AT......C...............A....T | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.0 35 ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC # Left flank : ACTCTCTGATAAGAGCCTTTAAAGAAAAAGATCCCAATTGCTATCTGGCTAGTTATACGAGGAGGTGAAGCCATGGGATGCGATTTTAATTTGACGGTAGAAGAACTGCTGTTTGCCAGAAATTATCAGCTCTACTGCCTAGTGATTTATGACATTGCAAATCAAAAGAGACGACTCAAATTGGCACGATTGCTGGAAGGCTATGGCAAGCGGGTTCAGAGATCCTGCTTTGAGGTAAAACTGAGCCAGAAGGTTTACCGTCGGCTGCTCCAGGCGCTTGAAGACTTTTACGAGGAAGATGAGAAAGACTGTATCACACTTTATAAAATTCGTCGGGAAGAGAGGGTTGTTTTCAACTCTTATGATGAGCCAGAAGAAGAGACACAGACGATTATCTTATGATTGCAAAACCTCTATGAACATGATAAACTGTTATCGGATAGTTTCAAGCTGAGGTACAAGATATAGCAGTGCCCGTCTAGACTGACACAAAATATGCT # Right flank : TATCACACCAGTGTATTTTTGCGATAGGTGAATCGCTTTCCTATCGTTGCTTCTGCAGGCTTAGACCTTTCAGTCGGTTTTTTTAGGAGAAATATCTTCAAAAAGGATTTGACTTTTATCGCTGAAAGGTTTATAACCAACCAAAATATAAATAAAAAAAGGGCGCCTTTTCGGTGAAAAATACTTTTCAGCCGGAGGTGCCTTTTCAAATAGAGAAATGATGAAAGAACTAAGATTATTTTTTAAAAGAACAGCTTTGCCGGCGAATGTGCTAGCGGTAAAGCTGCAGGGTTATCTGATGGGTCAGATTTCCGATGACTACGCCGAATTTTTGCACCAGCAGGAAACCAATCCCTATGCCTCCTTCGTAATAGATAGAGGGGATCAGCAAGTCTGGACGGTCAGTCTCCTGACAGAACAGGCTTGTGAGCAGCTTCAAGAAGGCTTGCTGTCTCTGCAGCATATTCAACTAGACTCTTATGCCGAGCTTATTAGCATTC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //