Array 1 22841-24092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWQE010000032.1 Ralstonia pseudosolanacearum strain Lallmahomed 13 IPO134-2017_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22841 29 100.0 32 ............................. ATTTGTGAGCGCCTCGCAGATGGGATGAGTCT 22902 29 100.0 32 ............................. CCTATGTTGCAGGATCAACCGGAGCAATGTCT 22963 29 96.6 32 ............................A GCCGAGACCCTGGCAGGCGGGCTCGAAACGCG 23024 29 100.0 32 ............................. AGGATGTCGATGATGACGGCTGGGCTTGGTTT 23085 29 100.0 32 ............................. TGCATAATAAACAATGTACTTAATACCTAACA 23146 29 100.0 32 ............................. TGACCGCAACGTACGGCGTCGCTTCTGGGCAG 23207 29 100.0 32 ............................. CGCGCAGATCGCGTTCTGCGCTTCGGCTTGCC 23268 29 100.0 32 ............................. CTGCCGCCCGGGTCGGACGTGACCCGCTTGTA 23329 29 100.0 32 ............................. TGCGTTGATCCGATCCTCGCTGCCTTCGGTCG 23390 29 100.0 32 ............................. CGGTCGGATCCATACCACTTTCTGACATGAGC 23451 29 100.0 32 ............................. GGATTACATGCCCACAATTGACCAATTATCGG 23512 29 100.0 32 ............................. CATGTAGAAGCAATTATCAAATTGCGGAACAC 23573 29 100.0 32 ............................. CCGGGTCAGTCACGGCTAAGAGAGAGACAGGG 23634 29 100.0 32 ............................. CCGAGGGCATGCGTCAATACCTGAACAGCCAA 23695 29 100.0 32 ............................. ATTCCCCATCCCTTTTTTTCGACTACTTGCGC 23756 29 100.0 32 ............................. CATCAATCAGACGCGAGCACAGGATTTCCGCT 23817 29 100.0 32 ............................. TCGCAGAACACCCCGCCTCCACGCACCGAGAC 23878 29 100.0 32 ............................. ATGCAGGGCGGCGCGTTTTTCCGCCAGCTGTT 23939 29 100.0 32 ............................. TTGACCAGGGTGTTGGCCAAGCGCTTGGCCAT 24000 29 100.0 32 ............................. GGATGATGTCCAGGAGGTATTTGATTCGATTA 24061 29 86.2 0 ............CA..........T...A | A,TC [24084,24086] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTTGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : AACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAATCAAAATAAATACCCGCAAGACTGCTACGATCCCCTGCTCGGGAGCAGGCACAGATTGTCAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGGGGTGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGCTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33458-34831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWQE010000032.1 Ralstonia pseudosolanacearum strain Lallmahomed 13 IPO134-2017_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33458 29 100.0 32 ............................. TGGCTCCACCAGCATCTACCCATACCTCAGTA 33519 29 100.0 32 ............................. TACGCTGTGCCCCGCGCCGGTCTTGCATGAAG 33580 29 100.0 32 ............................. CCGCTCAGGATGGATTGCCATTTTCTGTTAAC 33641 29 100.0 32 ............................. ATTTCAACATCGGTATGGAGGCAGCGATTCAG 33702 29 100.0 32 ............................. CCATCACCCGCGCCAGCGCCGCGACGGTGGCC 33763 29 100.0 32 ............................. ATCAGTGGTGGATTCCGTGGGGAGTGGCTGGA 33824 29 100.0 32 ............................. CCGAACCTGCAGTCCATGCGCCCGCTGGGTCA 33885 29 100.0 32 ............................. GCGTCAACGTCCCAGCCAGGCGGTACATGATG 33946 29 100.0 32 ............................. GCGCCGCCCGCAGGACCGTCGCGGGCGGACGG 34007 29 100.0 32 ............................. TTTCGCGTGTCCGGCCGGGGATTTCTTGTCGT 34068 29 96.6 32 ............................T ACAATGGGCTCGTATAGAACGTTTGACTCCCT 34129 29 100.0 33 ............................. CACGTCAGACGGAATGCGGTGCCACAACCTGGG 34191 29 100.0 32 ............................. ATTTCTGCACCTCACGAACGCAGACCAGATCA 34252 29 100.0 32 ............................. GCCACCCGCAGCGCTTCCTCTGGGTCGTCCCA 34313 29 100.0 32 ............................. TCGCTGGTGCAGGCGCCCCCGATGATGGTCGC 34374 29 96.6 32 ......T...................... GTGTTCGCTACCACGCTAATTGCCCGAGGCGT 34435 29 100.0 32 ............................. TCATCCCGGCCGGTAGCACTATCCGTGTAGAG 34496 29 100.0 32 ............................. CGCGGCAGCTCCACGAGGATGCGCGGATGGTC 34557 29 100.0 32 ............................. CAAACGAGTCTCGATAAGGTCCCTGTGCTCGA 34618 29 100.0 32 ............................. ACCCGCAAGACGCTCACGGCGGACCAGAAAAG 34679 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 34741 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 34802 29 86.2 0 ............C..........ACC... | T [34816] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATCCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : GCCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //