Array 1 225986-230895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009247.1 Corynebacterium frankenforstense DSM 45800 strain ST18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 225986 29 96.6 32 ............................G AACCGGTAGCGGGCCTGGTTGGTTTGGTGGTG 226047 29 96.6 32 ............................G ATCCGGCCCATGCCAACCGACAGGCTCGCCGT 226108 29 100.0 32 ............................. CGATCGGGGACGCGTCAACCATTGCCGGGGGT 226169 29 96.6 32 ............................G GACGCTAACCGCGCCGCGGGCTCGATCGTCAC 226230 29 100.0 32 ............................. CGCGCCGCGATGATGGCGCAAAACAGTGAGGT 226291 29 96.6 32 ............................G TACGGCGCTGGTGCTGATGGTGCCGACTACTC 226352 29 96.6 32 ............................G GAACTGACGACATGACCCCCGAGCAAGACAAG 226413 29 100.0 32 ............................. ACAGGATCCAGCAGCGCCGCGCCGAAGCGCCC 226474 29 100.0 32 ............................. GGCCCCTCAACTGGCGCTTTTCTAGTGTGTTG 226535 29 100.0 32 ............................. GTGGGCACCAGGTTGTCTTCGTCGCGGCGGCG 226596 29 96.6 33 ............................G CTCGACCGCCGCCTCGCCGCCCTCGAAGCGGAA 226658 29 100.0 32 ............................. ACATGCCCATCATCAAGCCGGCAACCGACCAG 226719 29 100.0 32 ............................. CGGCGTCGTATCCGCCTGTACGACGAGGAGTG 226780 29 96.6 32 ............................G GACCCCGTCCGGGTAAATCGTGGCGTACAAGC 226841 29 96.6 32 ............................G GCGCTGACGGACGGCATCATTGACGGCTCCGA 226902 29 96.6 32 ............................G CGGGCCGGGACCGGGTGGCTTCGAGGTCGGCG 226963 29 100.0 32 ............................. CCTCGCCCCGCTCGACGACCCCCACTACGACT 227024 29 96.6 32 ............................G ACCGGCATCGAGTTGTTCACGAAGTTGGCCGG 227085 29 100.0 32 ............................. TCCTTGGACATGCCGCGAAATGTCGGCACGAC 227146 29 100.0 32 ............................. ATCATCGTTGTTGTAGAGGTCGCGCTGTTCCT 227207 29 100.0 32 ............................. ATCATCGTTGTTGTAGAGGTCGCGCTGTTCCT 227268 29 100.0 32 ............................. GCCCGCAGCGTCGGCATCGAGGTGTCCAACAG 227329 29 96.6 32 ............................G CAGCTGCCAAGCCTCACCGGTCGCCTGGAAAT 227390 29 96.6 32 ............................G CCATGTCACCCAGGTTCAACTCCAACTGCCGC 227451 29 100.0 32 ............................. TGGCAGACCTGGTTAATAAGTGGTGCAGGCGC 227512 29 100.0 33 ............................. TCGGCGTTGCGGTCGCGCATGGCGAAGATGTTA 227574 29 100.0 32 ............................. CGAGCAGCCTCCACACACGCACCCAACGACAC 227635 29 100.0 32 ............................. CCGTCGACCTTCTCGCCGGAGGCGTCAAAATC 227696 29 100.0 32 ............................. CACTTCGATGTGACGACCGATGAGATGAAGAA 227757 29 96.6 32 ............................G ACCCACGAGCGGCGCACGGTGATGGTGCCGGG 227818 29 100.0 32 ............................. CACTTCGATGTGACGACCGATGAGATGAAGAA 227879 29 100.0 32 ............................. CCACCACCGCTGATCGGTGCGGCACCAGGCTT 227940 29 96.6 32 ............................G ACGTTGATCAGCTCTTCGTCCGGCCGCGAGTA 228001 29 100.0 32 ............................. ATCGCCTGCTTCGTCGACTCACTGATCGACAC 228062 29 100.0 32 ............................. CTTCCTAATGCCCTTGTTGTAGACCGTGTCAA 228123 29 100.0 32 ............................. GCACTGCGCAGCGAGTTCCAGACGGACTTGAT 228184 29 96.6 32 ............................G TCGAGGACGGTCACGGTCGCACCTCCTGCCAG 228245 29 96.6 32 ............................G CCGCGCCTGGAACACACGCTCCACAATGTCCA 228306 29 96.6 32 ............................G TCCTGCCACACCGCCGCGGTGATCTTCACTCC 228367 29 96.6 32 ............................G TTGACGAGTTTCCAGGCCCCGCCGATGATGGC 228428 29 100.0 32 ............................. GCGCCACCGGCGTCGAGGGCGAGGCCGGAGAA 228489 29 96.6 32 ............................G ATCTTCATCATCATGAAATTCGCCCAGGAGAT 228550 29 100.0 32 ............................. CCGTGAGTGCCCGGTGGCGGTGCAGGTCTACG 228611 29 96.6 32 ............................A CCACATCGGGTCCATACGCACCCGAACCTTCC 228672 29 96.6 32 ............................G GATTGGCTAGACACACACCCGGAATGGGCGAA 228733 29 96.6 32 ............................T GTGACGGCGGTGAGCCGGCCCCACTTGAACTC 228794 29 100.0 32 ............................. TTCTTCGAGTTCTTCGGGGCGGCGGCCTGGAT 228855 29 100.0 32 ............................. TGGGACTCCGCCCCGGCGGGCTGGCTGATCCC 228916 29 96.6 32 ............................A CCTTCTTCACGGTGAAGAACGGGCCGGCTGGG 228977 29 100.0 32 ............................. CAAAACCGCGACTCATCACGCTCAAACCCCCA 229038 29 100.0 32 ............................. CAAACGACCAGAAACCTTAGCCACCAAAACCA 229099 29 96.6 32 ............................G TAGGGGAGAGGCGTCAATCCGTGCAGGTAAGA 229160 28 93.1 32 .................-..........G GGCGCCGGCTGGCATGGCAGCGCCGTACCGGG 229220 29 100.0 32 ............................. ACCTGCCGCTCACGCGCATGCACCGACAACAG 229281 29 96.6 32 ............................G AACTGGCCGACACCGGTTCTGGATTCTTCGGC 229342 29 100.0 32 ............................. CACGACCCCAGCCATCGACCGGTACCGAATCA 229403 29 96.6 32 ............................G ATGAACACCCGCGCCGCCCGCGGCGTCACCGC 229464 29 96.6 32 ............................G TGGGGCGCGATCATCGCGGAGGTGCCGTTTTT 229525 29 100.0 32 ............................. CGGCCTACCCACCCACCCGCTTGTCTCGGGAG 229586 29 100.0 32 ............................. CCCGTCGAATCGCCGTACAAGGTGACCATGCG 229647 29 96.6 32 ............................G CCTTCGCCGCCCACATGGGCATCGCCTGGGCT 229708 29 93.1 32 .....T.....................T. CAGGCAAGCCAGCGCCCACTACGCCGTCGACC 229769 29 96.6 32 ............................G CTTCACACCGCGGGCTGGGTTGACCTTGATCT 229830 29 100.0 32 ............................. ACAACAGGATCGTGCGGCTCGGCGACTTGATA 229891 29 100.0 32 ............................. ACGACCTCGGCGTCGACGGGGATCGGCTTAAG 229952 29 96.6 32 ............................T CGACCGGCCCCAGATGGTAGAAAGGCCCCGAC 230013 29 96.6 32 ............................G CTCATACACGCATGATCGCCCCACCCCCGGTC 230074 29 96.6 32 ............................G CAGCGGGACCAGGGCCGTGAGGTCGAGGACTT 230135 29 100.0 32 ............................. CACCACCGCCGCCTAGCGGCTAGGAAGAAGGT 230196 29 93.1 32 ............T...............G TCCCGCTACTGGCGCGCCGGGCTGGCACACCT 230257 29 100.0 32 ............................. GATGCCCGCGGCATCGTCAGCGTGCCTTTCAA 230318 29 100.0 32 ............................. AGGCCCCCGTACCCACCCTCGGGCAGGGACAC 230379 29 100.0 32 ............................. GCGGGGTGGCGGCCGCGCAGTTCGAGGCCCGC 230440 29 96.6 32 ............................G GTCCAGATCAGCTGGTGCACTCCCGACGGGGT 230501 29 96.6 32 ............................G AAGCATTTCGAGAAGGTCGCCGACAATCCCTC 230562 29 100.0 32 ............................. CCGAGTGAGGCGCTACTCGGAGTGACACACGG 230623 29 96.6 32 .................A........... GGGACAAACCAATGAATGACGCCCGGTTGAAA 230684 29 93.1 32 ..T.........................T CGGTGTGTCAGCTCGTGGTGCACCTCGCGAAG 230745 29 100.0 32 ............................. GGGCTACACGTCGACTCGCGGGCGGACCAGAT 230806 29 93.1 32 ......G.....................T GTGTGGGAAGCAGACCCGGACCCGGAGCCGGA 230867 29 89.7 0 ..T...G....................T. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 98.0 32 GTCTTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : CTCATGCTGTGGAACGAGCTCGAGGTCATTGCATCCGGGGTGAATTGGGGGTCAGAGGAAGATCCGGTGATGCACTGATGATGGTTCTTGTGGTGACGGCCTGCCCGGCCGGCTTGCGTGGAGATCTGACGAAATGGCTGATGGAGGTCGCTCCCGGTGTATTCGTCGGTAGACCCTCCGCTCGGATCCGGGATCTGCTGTGGGATCGAACTGAGGAGCTTCTCCAACAGGGGAGAGCGATCCTGGTGTATTCGACTGACAACGAACAGGGAATGGAATTCCGCACGCATTTGAGCGATTGGACACCGACTGACTTCGATGGGCTGACACTGATGATGCGCGACACCAGAGCCGGCGCGGGGACGGCGCGGAGAAACACCGGCTGGAGTATCGCCAGAAATGCGCGCCGGGCCCGTCGCTCGCACGGTTAGGGCCGGGCCTTCATAGACGAGTCGTACCTAGAATAGGGTTCAGGCTCCCAAAGCTGCAGCTCTGCAAGT # Right flank : CGGCCGCGACGCCAAACCGCTCCGGCCTACCCGGCGTCGACCGCGACCCCGCCCCCGTTCCACTCGACCTCGCGCCGCTTGACGTGCCGGATCACCGCGTAGGTCACCGGCAGCACCACGACCTCGATCAGGGTCTTCCACAGGAACCCGACCACCACGTAGTTGACCGCGTCGCCGGCCGTCGCGATCCCGATCACCGGTGCGGCGATCAGGCAGAACAGCAGCGTGTCGGCGAACTCGCCGACCACCGTCGAGCCGATCAGCCGCGCCCACATGTTCGCGGGCCCCAGCCGGCGCTTCATGCGCACCAGCACCCACGAGTTCAGCAGCTGCCCGACCAGGTAACCGGCCAGCGAGGCCAGCACGATCTGCGGCACCAACCCGAGCACCAGCGAGAACTCGTCCTGGTTCTCGTAGAAGCTCGCGGCCGGCAGCCAGATGGCCACGTAGAAGCACACGACCGCCAGCGCGGCGACGGCGAAGCCGGTGAGGATCGCACG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2135068-2132966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009247.1 Corynebacterium frankenforstense DSM 45800 strain ST18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2135067 28 100.0 33 ............................ GGACGGCACCCTCTACCGCAAGCACTCCTCGAA 2135006 28 100.0 33 ............................ TCGGTAGCCGGCCTCGGACTCGGGCTCTCCCCA 2134945 28 100.0 33 ............................ CCGACGCCACGGGGTCTTGGGCTGAGCGTATCC 2134884 28 100.0 33 ............................ CTCGGCCTGGCGGGTGGCGTCGACGTTCTCGGT 2134823 28 100.0 33 ............................ CACCTAGGCAGCAATAGACCACGCCCCGCGCGC 2134762 28 100.0 33 ............................ CTGCAGCAGGTCCAGCAACGCGTTCGACTTGCG 2134701 28 100.0 33 ............................ CGAGGGGCTACTCGCGACCGGCGCCGACACGCT 2134640 28 100.0 33 ............................ CGTCGCGCTCGGCGCGACGATGCTCGCCGCTCG 2134579 28 100.0 33 ............................ CGAGCTCGGCGACGCGCTCGGCGGCCCACCCGG 2134518 28 100.0 33 ............................ GCAGGGTCCCCTTTCCGTCGAGATCGCGGAGGA 2134457 28 100.0 33 ............................ CGTGGGCACCAGGTTGTCTTCGTCGCGGCGGCG 2134396 28 100.0 33 ............................ CATGGCTTCCACGCACGCCTCGGCGACCGCCCC 2134335 28 100.0 33 ............................ GATGGCGCTCGAGAGCGTGTTTCAGGGTGTGGC 2134274 28 100.0 33 ............................ GAAGGAGGATTGATCATGACGGAGAAGACACGA 2134213 28 100.0 33 ............................ CACCACGAACGTACCCTGCGCCGAGGCCAGCCG 2134152 28 100.0 33 ............................ GTTCGACGACGACCGGGCAGCCACGTCGGCGGT 2134091 28 100.0 33 ............................ CCACTCGGCCACGGCGACCACCTCCTGCTACTC 2134030 28 100.0 33 ............................ GTGGGCGGCCCGGGCGGTGAGCATGGCGGCGAC 2133969 28 100.0 33 ............................ TGTCCCGAACGTCGCGCAGCGTTTGCGGCACGG 2133908 28 100.0 33 ............................ GAGGGGTGATCACCGATGGCAGAGTCCACATGG 2133847 28 100.0 33 ............................ CTCACAAAGCGGTAGCTATCACGTACTCGTGGA 2133786 28 100.0 33 ............................ GTCCACACCACCGCCTCCGGCATGACCACCCGA 2133725 28 100.0 33 ............................ GATAGCCGGCTCGCCGTCCACTTCCCAGACCCG 2133664 28 100.0 33 ............................ CGGATCCTCACCCGGGCGCAACGACCACTCCTT 2133603 28 100.0 33 ............................ CCAGATCGCGATCTCCTGCAACGCCACCCACCT 2133542 28 100.0 33 ............................ CCTCGAAAACGTCGAGAATTCCGCCCTCGCCGC 2133481 28 100.0 33 ............................ GTACGAGGTGACCTTCGAGTGCTTCCCCGACGC 2133420 28 100.0 33 ............................ GCTCATTGGGGTGTCTCCATCGTCAGCGTCGAC 2133359 28 100.0 33 ............................ GGTCAACAAGGACATCCTGGAGCCCCTGGCGGA 2133298 28 100.0 33 ............................ GGCGCCTGCGATGATGGTGGAGTCGAGTTGGGT 2133237 28 100.0 33 ............................ CTGGCAGCGCGGCGGCGGCCGCGAGTCGAACAG 2133176 28 96.4 33 ................A........... CAGGCCGCCGATGGCGTTGGGGGTGGGTGGTTG 2133115 28 100.0 33 ............................ CATCGAGATCACCTCGGCGGCGTCCTCCGGACC 2133054 28 100.0 33 ............................ CGTGTCCGTCAGGGAGTCGAACGCGGCCCGCGG G [2133032] 2132992 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.8 33 GTCTTCCCCGCATGCGCGGGGGTGAGCC # Left flank : GTGACGGCCCGCATCCGGTGAGTCTTCCAGTATTTATCCGCAATGGAAGCCCTTTCCACTGTTTGAACCACGACGAGTTCGAGGTGCCGGATAACGCCCTGTTTGAGCGTGGTTCGGGGCTCGTTCCCGGGAAGATGAACGGCGGGATCGATGTCGAGGCTGATCTGCGGCTGACGGATGGCCAGGTGGAGGACCGGTATTCTCCAGGGCTGCTGGCGTGGTCGATGCTCGGCATGATCGCGCTGGGGATGCCCGGGTCCGAGTACGGTGTCGGTGTGGTCGACGGCGAGCTCCGACTTGCCCTGCCTCGAGGCTGGGTGACTATGGATCAGATCAGAGACCTGATGCAAGCTGCCCCGGAGCGGTGCGAGTTCCTGTCGTGGCGTTCGGCTTCCTCGACTCTCTCGAGTTACATGAAGTTGTGGTTGCCGGTCGTAGATGGCTGACCGAAGTCGTATCTGGAACAGGGCCTAGGCTGGAATAGCCGCAGCTCGTCGAGT # Right flank : CGGAGATCATCGTCGACACCGGCATCGGTGATTAAAGTTCCCGCATCCGCGGGAGTCCACCCGGCGGCCGCGACTCAGTCCCCGCCGGGCGCGCGCCGCGTCGACTCCCGTTCGATCAGCCGGTTTGGCAGCACCCGCGGCCGGCTCATCGGCCCGCGTTCGCCGCGCACCAGCGCCATCGCGTTGGCCGCGGCGACGCGCCCGATCGAGCGCAGAGGCCCGGCCACCGTGGTCAGCGAGGGCCGCACGATCGTGGTCAGCTCCGTGTTGTCGAAGCCGATCACGGCGACGTCCTCGGGCACGCGCCAGCCGTCGTGGCGGGCCTGCTGCATGAAGCCGATGGCCACCAGGTCGTTGAAGCACATCACCGCGTCGGTCGGGTCCTTGCGCCAGCGCACGAAGGCCCGGCGCCCGCCGCGGGTGGTCGGCGCGTCGGCGTGCATGTGGTGCACGGAGACCCGCGCCAGCCGGCGCACCTGCTCCAGCGGCAGCTGTTGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCATGCGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //