Array 1 166517-165101 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYN01000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2166 BCW_8420_1__paired__contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166516 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166455 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166394 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166332 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166271 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166210 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166149 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166088 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 166027 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165966 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165905 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165844 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165783 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165722 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165661 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165599 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165496 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165435 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165374 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165313 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165252 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165191 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165130 29 96.6 0 A............................ | A [165103] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184630-182649 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYN01000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2166 BCW_8420_1__paired__contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184629 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184568 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184507 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184446 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184385 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 184324 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 184263 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184202 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184141 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184080 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184019 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183958 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183897 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183836 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183775 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183714 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183653 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183592 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183531 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183470 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183409 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183348 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183287 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183226 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183164 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183103 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183042 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182981 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182920 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182859 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182798 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182737 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182676 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //