Array 1 468562-470665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWK01000003.1 Salmonella enterica subsp. enterica serovar Livingstone strain CKY-S4 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 468562 29 100.0 32 ............................. CGCGAACAAATGCCCTTACCTGCTTAGTCTTG 468623 29 100.0 33 ............................. CCCGCCGCCGTGGGGAGATCTCATCCGGCGTGC 468685 29 100.0 32 ............................. CGGCAGAACTGCCACATGGAAACGGCAATAAC 468746 29 100.0 32 ............................. GCACTCCCGGTATCGCCGCAGATACAGGCGTT 468807 29 100.0 32 ............................. CGGTCAGATTGTCAGTATAGGGCAATCTGACA 468868 29 100.0 32 ............................. CGGCAACAGTAGCCACTCAGGGTGGATGGTAC 468929 29 100.0 32 ............................. TGCTACTGCTATCTGTAAAATAGCGCTTAAAT 468990 29 100.0 32 ............................. GGGCGGTAACAGAATGAGCAAACCCACAATAG 469051 29 100.0 32 ............................. GTGGTTTCATCCTGATTAATCATCGAGCGCTC 469112 29 100.0 32 ............................. TCCAGAAATAGATAAACGGTCATCGTGTGGAT 469173 29 100.0 32 ............................. GCGGCAAGAGCGTTAAATACTGGCCTCAATGA 469234 29 100.0 32 ............................. GGGGAATGGTCGGTAATTTTGACGGACGGTGA 469295 29 100.0 32 ............................. CCACTGTCGGTGTTGATCGCGCCGATATTGAG 469356 29 100.0 33 ............................. TGCTGGCCGCTCGACGGCCGGGCCACGGCGTGC 469418 29 100.0 32 ............................. TAAATCATACCGGTACGATAGAGTCATATGAG 469479 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 469540 29 100.0 32 ............................. TCGAACAGCGACTCCGACCAACCACTGCCGGA 469601 29 100.0 32 ............................. CGCACTCGGTTTACTCACCACACCCGCGATTG 469662 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 469723 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 469784 29 100.0 32 ............................. AGAAACCGCTTCGTCTTTGCCCGACTCGCTTT 469845 29 100.0 32 ............................. TATCCCGGTAGGGATAAATTTCACAATCAGGA 469906 29 100.0 32 ............................. ACCTACGTCACGACAAGGAGATAGCCGACACC 469967 29 100.0 32 ............................. GTAACGACGGTTCCGGCGCTGGAAAAGGTGAA 470028 29 100.0 32 ............................. CTGTGCTTTCTTTTCGGCACGCTCGCACCGGT 470089 29 100.0 32 ............................. GGATCTAACGAGCTGTAAAAATTCCGTGTTTT 470150 29 96.6 32 ............................A TAAATTGCGGTTTTACGGTTCGCTGAATGTCG 470211 29 100.0 32 ............................. CACCCACATCCGATTTAGCTCCATATATCCCC 470272 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 470333 29 100.0 32 ............................. CATTAGACTCGTATGCGACCGCTATCGGGGGA 470394 29 100.0 32 ............................. AGCGGGAAAAAATCGAGAAATATATCGACGGC 470455 29 100.0 32 ............................. TCGCGCGTTAATGAGGCCTTGCGTACCTGGGG 470516 29 96.6 32 ............................T CGTTCATCGGCAGCGTCACGCAATATGAAGAT 470577 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 470638 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 486922-487988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWK01000003.1 Salmonella enterica subsp. enterica serovar Livingstone strain CKY-S4 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 486922 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 486983 29 100.0 32 ............................. AGCTACAGGAACGCCGCAAGGCTGAAGCGCCA 487044 29 100.0 32 ............................. GCTAAAAAATTAGGGGGGGGCGTTGATGGCTG 487105 29 100.0 32 ............................. CCATTAAACCGTGGGGCAAGCACCGTGCCGAT 487166 29 100.0 32 ............................. AAATGGGCGACCAGCGGCATTTTTATGTTCCG 487227 29 100.0 32 ............................. CGCAATTACACTGACAATTCATCAGCACAGAC 487288 29 100.0 32 ............................. AATTATTTGGATTCGTTATGAATTTTAACAAA 487349 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 487410 29 100.0 32 ............................. ATCGCATCAATAGCCTGCTCAAACGTTTGGGT 487471 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGCTGGT 487532 29 100.0 32 ............................. ATTGGAATTTGTTGTGAAAAACACGGGCGCAC 487593 29 100.0 32 ............................. TGGCTGAAACTAGTCAATCCACCTCAATCTGC 487654 29 100.0 32 ............................. GAGTCATAGTATGAGCAGGACTGATTATTTAA 487715 29 100.0 32 ............................. GAGATGAGGCCATATCTGTACAAAGGGAGTTA 487776 29 100.0 32 ............................. AATGCTCTTTCCGTTGTGTGTTCCGCATAACA 487837 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 487898 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 487959 29 93.1 0 A...........T................ | A [487985] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGTCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //