Array 1 3503-2671 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABTCT010000100.1 Enterococcus faecium strain SWEnt-1198 contig00100, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      3502	    36	 100.0	    31	....................................	CAAATAGATGCCTCATACATAGCAATAGTGC	
      3435	    36	 100.0	    30	....................................	TAATACTGTGCTGAAAACTGGCGTACACAT 	
      3369	    36	 100.0	    30	....................................	TAATTTGAAGTAATAGTGTAATCCACCACT 	
      3303	    36	 100.0	    30	....................................	AACATTAATCGTACAAGGAAACCATGACAG 	
      3237	    36	 100.0	    30	....................................	TCTCTTTATCTAATCCTTCTTCGACTACTT 	
      3171	    36	 100.0	    30	....................................	TAAATATCTAAAGCCTATTGTTGATACTTT 	
      3105	    36	 100.0	    30	....................................	TGTACAAGAACGTATTGATAAGGAAATGTA 	
      3039	    36	 100.0	    30	....................................	AGATTAAAAGCATGGACTGCCAAACTTAAA 	
      2973	    36	 100.0	    30	....................................	CGTGGTAGAATTAAAACGAGATAACTTAAA 	
      2907	    36	 100.0	    30	....................................	AGATTAAAAGCATGGACTGCCAAACTTAAA 	
      2841	    36	 100.0	    30	....................................	TACTCCCTGAAGGACCCCAGTCAGAACCTG 	
      2775	    36	 100.0	    30	....................................	TCGGCAAAAATCAATTATCTCTGAATCACA 	
      2709	    36	  91.7	     0	.........................A....T....A	|                              	G,CA [2674,2679]
==========	======	======	======	====================================	===============================	==================
        13	    36	  99.4	    30	GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC	                               	       

# Left flank :   GCCAGCTCAATGAAAAAGTAGAAGTGAAATCAATGATTGATAAACTGACAGCGACAATCAGTGAGCTGATCGGGTACGAGTTGTTGGATCACGAACTCGATTTAGAAGGAGACGAGATCACGGTCTTGGAATTATTCAAAGCATTGGGTATCAAGATCGAGACAAGAAGTGATACTATTTTTGAGAAATTACTTGAGTTGCTTCAGGTTTATAAATACTTGTCTAAGAAAAAATTATTGGTTTTGATCAATGTGTGTTCCTATCTCACGGAAGAAGAAATAAGCGAAGTGCAAAATTATATTTCGTTATATCATATGGAAGTGCTATTTGTAGAGCCGCGTTCGATCAAAGGGATAAAACAATTTGTCTTGGATAAAGACTATTTCTTGAACTTGGAAAACATGGTATAATGGTAAAAAAGAGAAGCGTTCAAAGCTGAAGTTTTGCTATGAACGAGTAGCGTGATTATGAAACATTGACGGAAAAATTTTTTCTGCGAG
# Right flank :  ACAGCCTTGCACTTATCGAAAGAGGATTAGTGTCAAGGCTGTTTTTCATATGAGTGGACGGAAATATCTGTTTTCTTTTACAATTGATAATAGATACTTTGCTGTATAGTCAGTAGCTGATATAAAAGTATCGGCTCTTAAATGGAAAAAAGATAGGTGGCGACGCAATGTTTAACACACAATTGATCGGTTATTTAGAATGGATCATTGCTATTTTAAATATTTGTTCTATCGGTATCTTAATTGCTGGGATCGTTCTTGTTCTATTCAAACTTTTTGATTGGTCTCATGTCAAGAAAAACTATGCAGAACGTAATGCTCGTAATGCAGATACAAGAAAACTGTTAGCAAGTTATATTTTGTTAAGCTTGGAAGTACTAGTCGTTGCTGATATCATCGAGTCAGTTATCAAGCCGACTTGGACAGATATTTTGAAGCTTGCACTTATTATTATCATTCGAACAGTCATTTCTTATTTCTTGAATCAGGAAATAGAAGAC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-2.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//