Array 1 529026-527776 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZMS01000011.1 Photobacterium sp. LAM9072 LAM9072_ctg0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 529025 29 100.0 32 ............................. ACGCCCATTCTTATCACCATACTCTGGAACAA 528964 29 100.0 32 ............................. TAACTATGACTGTAACCCCACTGGGGGCTTCA 528903 29 100.0 32 ............................. ACATCGCAGCACTTCTTGAGCTGGCTGACTAT 528842 29 100.0 32 ............................. TTTTCCCGCCTGGTAGGTCAGTAATGAACGCA 528781 29 100.0 32 ............................. AACTGCTGCAGTCCCATGCGCTACTCAGAGGT 528720 29 100.0 32 ............................. CCACAGACGACAGCCTCTTGCTCTGCCATCCG 528659 29 100.0 32 ............................. TGCAGCACGGCATGCCTTTATCCCTCACCTGC 528598 29 100.0 32 ............................. TATTCTGCGGATACTGCTTCTCAGGCTTCAGG 528537 29 100.0 32 ............................. TGAGCGATGCCGCGTGCGGGAGGAGATCCGAC 528476 29 100.0 32 ............................. TTCGTGCATTCAGTTGAATTCGCCGGGGCAAT 528415 29 100.0 32 ............................. TTTGGCGATGGCTATGAGCAACGATCACCCGA 528354 29 100.0 32 ............................. GTCGTTGCTGTATCGTATTTCACCACCATGGA 528293 29 100.0 32 ............................. TTATTTCGATCCCCATCAATACCCCTTTGCGC 528232 29 100.0 32 ............................. AAAACTATCACATCTCTCACTAAAAACTGGGC 528171 29 100.0 32 ............................. GATGGATTCACTATCTGATACCAAATATGTTG 528110 29 100.0 32 ............................. ATGCGGGGGAAACGTGGATACTAATGAGCACA 528049 29 100.0 32 ............................. GCTAGAGGCGTAGCGGAAAGGCTAATAACTCT 527988 29 100.0 32 ............................. AGGCATTAAACCCTCGTCCAGTAATCAAGCAG 527927 29 100.0 32 ............................. TCGGTCATGACGCTGCAATCAGGACAAACGGT 527866 29 100.0 32 ............................. ATGCCGCGACCTGCTGGCACGAGCGGTATATA 527805 29 93.1 0 ......................G.G.... | G [527784] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGTGAGTACGGGGATGAACCG # Left flank : TCCATTGATTGAGGAAGTGTTGAGCGCCGGAGAAATTGAACCACCGCTGCCGCCAGATGATGCGCAGCCACCTGCGATTCCAGAGCCGAAGTCACTTGGGGACGCCGGACACAGGAGTAAATAACCATGAGTATGCTGGTGGTCGTTACCGAAGCCGTGCCGCCCAGACTAAGGGGGCGACTGGCCGTCTGGCTGTTAGAAGTGCGAGCCGGTGTTTATGTGGGTGATGTGTCGCGCCGGGTGCGTGAAATGATCTGGGAACAGGTGTCTGAGCTGGCCGAAGACGGCAATGTCGTGATGAGTTGGGCGACCAATACCGAGTCGGGATTCGATTTTCAGACTTACGGCGAGAATCGCCGCGAACCCGTTGATATAGATGGTTTACGCCTCGTTCTGTTCAAGCCGGTTGATGCGCCAGATGCGTAGTTTTCGGTAGCGAAAAGTTTGGTAGAATTTTTGAGGTGAGAAAAGTGCTTATAAAACAATGATCTAAAATTAGA # Right flank : ACTGAAGCAACTTTATGGTCAGGGGTTATCAGGGTTACTTCATTTGACCGATGTCAAGAGGTAGAGTTATTATAACTCTAGGTGAAATGCATAGATGAGGAGCAGTGAAAAGCAGAGACTTAATTAAAGAACTGGAAGCAGCAGGTTGGGTGTTGGTTAGAGTGAAAGGAAGTCATCATCAATTCAGACACCCAAGCCACAAACTGCCGCTAACGGTCCCCCATCCGAAAAAGGATTTAGGAATGGGGCTGGTAAAAGCCATTAAGAAACAGGCGGGACTGTAAAGCCCGCTTAATCTGTGATTCATTGTTGAAGGAGATCTTATGTTGTATCCAATTGCAATCGAAGTAGGCGGTTCTGATTACACTCATGGTGTGGTTTTTCCTGATTTGCCAGGCTGTTTCTCTGCCGGCGATACATTAGAAGAGGCTATGGCAAATGCTAAAGAAGCAGCTCACTTGCACTTAGAGGGATTGGCTGAGCATGGTGATATGCCGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 538516-537937 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZMS01000011.1 Photobacterium sp. LAM9072 LAM9072_ctg0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 538515 29 100.0 32 ............................. ACCATGCCGCCATCCTCACTGCCCCAAGCTGA 538454 29 100.0 32 ............................. GTGCGCATGGCTGACTTATGGATTCACGCTGC 538393 29 100.0 32 ............................. GTCATTGATAACAATCTGATCGCCCGTTTCCC 538332 29 100.0 32 ............................. TGGCATCAACATTGGGGATAGACTGCATTGAC 538271 29 100.0 32 ............................. GTGACGTTATGGCTAAAATATTGACGGATATT 538210 29 100.0 32 ............................. ATCAACTTTCGCGACTCTCGCCTGCAAAAGGT 538149 29 100.0 32 ............................. GTTTCATCTGATATAAACTCATTCGCATCAAT 538088 29 100.0 33 ............................. GGGTTGGTGAAAGAGGTCGAGGCCATATTCCAC 538026 29 89.7 32 ............AGC.............. AAAAGAAAGGTGCTCGCTCTGAAGTTTTAAAT 537965 29 75.9 0 ...........GTG...........CGAT | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.6 32 GTGTTCCCCGTACATACGGGGATGAACCG # Left flank : TGCGAAAAGAGCCTCAAGAAACGGGCCATCACTCAGCGCACAAGCGCGGCAAAAGAGGATCAGTCAAATCACACAACAGCTGCTGGCGGGTGAGTTGACTCAGGGGCAGGCACTCAAAGCGCTCCGGGTCAGTGTGCTCGGCCTAAAACAGGAGGCGTATGCAAATCTGGTTGATGTGTCGAGAAAAACACTCTCCGAAATAGAAAATGATCGGGGCAGTTATACCACGGATATTCTGAATAAAGTTTTCAAACCATTTGGGCTGAAAGTGGGGTTGATTCCGTTATCCCCCGGCGCCTTGAGGGCGCTCATGTCTGGACAGTGAAATCAGGCATGATAATTATTACTTTGTAAACTGATGTGCAAGCCCTGAGCTAAGATGGCTTGTATCCATGGGGCAATGACTCAGAAATAGACAACGAAAGGTTTGATGGATTTCAAAATCTGGTAGCATTTTGAGTCTCAATAAAATTCTTATAGAACAGTAAGATAATTTTAGA # Right flank : TGCAACAACTCTGCATGCTCCGTGTAGGTGTGCCCCCCTGTTATCTACTGCATGGCATGAAGAGATTGATTTCATACCATCGACTTTCATCGTTTAATCACAGTATTCATCTGATTTCATTTGTATAGTTCGTCTTAAGATGATTGATTGTGGGGCGGTGATGCCAACTTATTTTCAATACTGGGGAAAAGCCAAACGCGATCCTGAGCAGCCCGGTGCAGATTATCATTTACTTCCGTACCACTGCCTGGATGTTGCTGCAGTCGGCTACTTGTTGCTGGATCCGAACAAGCCGCTCACTCAGGATTTGGCAGACTTCCTTGATATCAAACCAGCACAGTTGCGTGTAATCTGGGCCTTTTGTCTGGCACTGCATGATCTGGGAAAATTTGCCTCAGCGTTTCAGCAACTGTATCCAAATGGCTACAAAGCTCTGCAACAACCGAATCGTGTGAAAACTTACGACGGCAGAGACTATCGCCATGATCGTATGGGGTTGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 540866-540655 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZMS01000011.1 Photobacterium sp. LAM9072 LAM9072_ctg0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 540865 29 100.0 32 ............................. CGATAACCGGGGCGAATTTCCAGTGTCGGCGC 540804 29 100.0 31 ............................. CTTTCAGATTGCCAGCGACAGTTTTTGCAGT 540744 29 100.0 32 ............................. AAGATGATGCCCATTCCTGACGGTTTGGATGT 540683 29 75.9 0 ......................GTCTATC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGTTCCCCGTAAGCACGGGGATGAACCG # Left flank : TTTATGGCCCGTTCGTGTTTGACCAGCGCTCAGGCCGCCATATCCGCCGTGCTGAGATCGCCAGCGCCGAGCAGATTGCCGCTGCCATCGACGACTTATCCGGCCTGAAAGCCGACATCGCTGGGCTGCCCACTTCCGCACTGCAAGCCGAACTGTTCTGGACAGTCGATTGCATGCTGCTCGCCAGCCAGATCGCACTGAGCTATGCCAACGCCGGGCACCGTGATCTCACTGCTTTACCGCCGCAAGACAAAGCCCGCATGCTGGACAAACTCGCCCCGGTCGAACAGGCCTACGCCGATTTGTGGCTCCAGCACTACCGTCCCGGTGGCCTGAAGCAGAGCGCTTCGCGGTTGGGGTATTTGCGGGGGTTGTGTGGAGATAAAGCAGTGGAATGAGCTATATCGTACTGTGCAATGAATGAGCTATTCTTGCTGTCAAAACTTGGTAGAATTTTGTTAACCGAATAAATGTTGTCAGAACAATAACCTATATTTAGA # Right flank : ATGCGTAATAAAAGTATCATGAAAGGCTTTTTATTCGTTAAAGTGTAAATTTATACGCGTTAATTGTGGTTGCTGCCATTTATGTATAAACTTTTACTCATTAAGGGTAAATCTGGGTGGCTCAATGGAAGAACTGACGATACAGGCGTTTATCAATCAAGCATGGGTTGATGCAGCAATCATCGCCTTTCCTGCCAGTGGTGAAGGCAATTTCCGCGTGACCGAGCTCAATTACCTGAGTGATTATGCATTTCAGTATCACGAGACTGATGATGTACATGCGGTTTCCATCAATCACCCGGTCTCATTTTTCTTCGATGACCTGGGGCAACCCGGCTGGCTAACCTTTATTGATGACATCATGCCGAGCGGGGCAAGCCGAAGGTATTGGGTCAAATATCTGGATATTGAAGATCTGAGCTTTCAGGAACAAAACTATATTCTGTTTAAATTCGGCACCATGTCGCCCGTTGGTAACTGGCGGGTAAAGGACTCGCTGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //