Array 1 1-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTO010000103.1 Photobacterium damselae subsp. damselae strain 206352-6(DK32) Contig_000103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ TTGCTGACTTGGTGAAAGAGCTTAAGCCATTC 61 28 100.0 32 ............................ AGCAAGAAAGGCCAAAGCAGAGGCTAAGCAGT 121 28 100.0 32 ............................ AAACCAGATGTTAAATGATAGTCACAAGTTAG 181 28 100.0 32 ............................ GATTAATAATTGGAGTTGCAATCATGGCCACC 241 28 100.0 32 ............................ CCGTCTAGTAACACGGGTTGAAAGTCTTAATG 301 28 82.1 0 ...........CA........A..CT.. | C [321] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : AGTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATCATTAGCAAAAGCATAAATATAGGTACTACATGCTCACAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCAGCTATTTATAAAGAAAAATTACTTAAGTTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAAAAAGCCCGCCGTCCAACTAAGCCAACCAAAAACTCCCAGCGTCGTCGTTTAGAGTCAAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTTCTGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42064-42631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTO010000017.1 Photobacterium damselae subsp. damselae strain 206352-6(DK32) Contig_000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42064 28 100.0 32 ............................ GTTCTCCGACTTCATGAACTTGAAACTGTTAT 42124 28 100.0 32 ............................ TAAACCATATTCATTTGGCAATATTCAATATC 42184 28 100.0 32 ............................ AAACCGCCAAAATTGACAGTTAACAAGTGATC 42244 28 100.0 32 ............................ TAGTCCCTGCGGGGCTTCTTTCTGCGCTCGTT 42304 28 100.0 32 ............................ GTAACTGTTATTGGTGCTGTTCTTGGTAATGG 42364 28 100.0 32 ............................ AAAACCCAGAAGCAGATGCGCCGATTACGTTA 42424 28 100.0 32 ............................ ATCGTCATAGCGAACGGTGTATCTGAGAGTGG 42484 28 100.0 32 ............................ AGTCACGCACAAATCAGGATACTGAGAGCAAA 42544 28 100.0 32 ............................ ATATCATCCAGCGATAACCCGGTCGGGATGAC 42604 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGTGTAGATCTAAAAGTCTCAAACTGTCATCTAATAATCTTTATTTTGATTCTTTTGGTGATTGTTTTAGGCTAAATTCAAAAGGGACCAAAAGTAGGCGGTTAAGTTCAAGGAGTGATCATGTCTTTAATACCAACAACAAAAGAGGAATTAGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATAGACTTAAAAGCAATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTTTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTCATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : ATGCAGGCAGAAATTCGCAATGGTTTGAACCTGCTTCACTACCGAATAGGTAGATAAAACTTAGACATATTTTACTCTTTAATCTGATATTTCGTCATTCTTGCCAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTAAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCTATCGCCAATACGACCGCCATTATGCTTGGAACAGGTACATCGGTGACTCAAGCTGCTATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 51098-51305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTO010000017.1 Photobacterium damselae subsp. damselae strain 206352-6(DK32) Contig_000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51098 28 100.0 32 ............................ ATCAAACACACCACTAGAACCACTAATATAAA 51158 28 100.0 32 ............................ ATTTTATCCAAACAATATTGCTCGAACTGGTA 51218 28 100.0 32 ............................ AGCGTGAGGATGTCTGATAACTGCCAGTAAAA 51278 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCAATCTTACCAATACCTCGTGATATTGCAGGGTATCGCACTGTGCATCGCGTACAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCGCTGACGAAAATCCCTGATGCGTTACAAGAACGATTAGCTTTACCTTTTATCCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTATTTATGTTGCGCTAGGAGAGATTCAATCAGAACCTGTTTTTGGTGAGTTCTCTAGCTATGGTATGAGCCGCACATCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTGAGTTTATACTTAACTTATTGATTTATAAATAAGACTGTAATGGGTGAGAAAAAAGGGTTTTTTATTGGAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCAAATAAAGTCTCCA # Right flank : T # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //