Array 1 40139-38766 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJWR01000020.1 Escherichia coli 541-1 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40138 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 40077 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 40016 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 39955 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39894 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39833 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39772 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39711 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39650 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39589 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39528 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 39467 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 39406 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 39345 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 39283 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 39222 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 39161 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 39100 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 39039 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 38977 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38916 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38855 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38794 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66723-65839 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJWR01000020.1 Escherichia coli 541-1 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66722 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGTGATCCGCA 66661 29 100.0 32 ............................. CTTGTGCTTAGGAATAGTCTTAATTTTGTGTA 66600 29 100.0 32 ............................. TCCTTTTCCTGGGCGTCCCATTCGATCCGCTG 66539 29 100.0 32 ............................. ACATTACGACCGGCGATTGTTCCGACGCGGAT 66478 29 100.0 32 ............................. CCGTGCGCGGTGTTCAGTTTGATCGGGTTGCC 66417 29 100.0 32 ............................. AACGCTGCAAAAGGCGCGAAAACGGTACAGAG 66356 29 100.0 32 ............................. GCAGATTTAACTGGGCGGCGATTTCTTTCGGG 66295 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 66234 29 100.0 32 ............................. CCCCCGGTGATCGAGATTCCAGGCGGGGAAAC 66173 29 100.0 32 ............................. ACCCGATCAATCAGTCGTTGTATCCAGCGCTC 66112 29 100.0 32 ............................. TACCCGAACCGCTCCCCGCACCATGCTTTATC 66051 29 100.0 33 ............................. AATTCCGAGCCTTTCGGATACGTTTCAGAACGC 65989 29 100.0 32 ............................. CATCACGAACCCGCTAAAGTCCATTCGGTAAT 65928 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 65867 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTGCTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTAATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //