Array 1 26463-28326 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019662.1 Corynebacterium ulcerans strain 0211 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26463 29 100.0 32 ............................. GGTTGCCGTCTGGAGTTCAGTATTTTGAGCTC 26524 29 100.0 32 ............................. TGAAAGAAAACGCAGCTGAGGGATTTTCCAAG 26585 29 100.0 32 ............................. ATGCCACCAGTTCCAATTCGTGAGCGCAGGAT 26646 29 100.0 32 ............................. TCACTGCGCATCACTCCCTCACCAAATAAATC 26707 29 100.0 32 ............................. CTAGCGCGGCGTTGCCGTTATAGAGCTTCTGC 26768 29 100.0 33 ............................. CTCTTTACTGGACGCGGATCAAGATTTTTAAAG 26830 29 100.0 32 ............................. CGCGAGTGTGGTGAGTTTACCTGCTCGCCACC 26891 29 100.0 33 ............................. GAAACCCGCGAGGGAACCCTCGACAGCCTCCGC 26953 29 100.0 32 ............................. CGCCCTTAAGATTGCAAATTGCAATCATTTTC 27014 29 96.6 32 A............................ CATTTTTCCTCCTCTTTCTCTTCGCTCGAATC 27075 29 100.0 32 ............................. TGGGGCATCCTCACGAGCTTTCGCAAGCTCAC 27136 29 100.0 33 ............................. CGCAATAGGTTCCGTTGCGGTATTCCTTGCGGG 27198 29 100.0 32 ............................. TTTTCAAAGCCTCAGGAAACGCCAAAAGCAGC 27259 29 100.0 32 ............................. ACCTTCACGTATAGGGTTTGACGCATTTGCCC 27320 29 100.0 32 ............................. CGCCTGCTAGGTGAAGATGTGATCCTCGCATG 27381 29 100.0 32 ............................. CGTGTGGTGGATTCCAGCCATCGCTCGCAAAT 27442 29 100.0 32 ............................. GGTTCCGAAGTGCTCGATAGCTAGGGCGCGCA 27503 29 100.0 33 ............................. TATTTTTAGAGAAGGGGCAGTAAAATAAAGAAT 27565 29 100.0 32 ............................. TGCCTCTAACGAGGTGGGGGTCAATTGTATGC 27626 29 100.0 32 ............................. CTGGTGAGGGTTTCTTTTTTCCTCTTGCTTAT 27687 29 100.0 32 ............................. GAACCGGGGCCAAGTCCACTACCCGGTGGTGG 27748 29 100.0 32 ............................. CGCCCCGAAGGTTGAGTATCACGATCGGTTTA 27809 29 96.6 32 T............................ GAAACTGCGTCTTTTAAGGAGCATTGGCATCA 27870 29 100.0 32 ............................. CGTGTCTCCGGATCGAGGGAAGAACTTCTGCG 27931 29 100.0 32 ............................. TGTGGGCCTGGTGCGCCCCAAGTCAGAATCTG 27992 29 100.0 32 ............................. ATTTCGCTTCAAAAGACTCAGGATTTAACCGC 28053 29 100.0 32 ............................. AATTGGGTTAGCCATTCGGTGAAGTTCATGCC 28114 29 100.0 33 ............................. CTTGGGGACGCTCAGGCAACGGCGGCCAAGCTG 28176 29 100.0 32 ............................. AGCCCGCCACCAAGAAGAAAATTCAGCAGCGG 28237 29 100.0 32 ............................. GCGTTCAGGTTTCCGCCGGCCTCAGCCAGCTT 28298 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : GCTGCAGCGCGAATAACTTTTTCTGCTAAGACTTCATCACGGATACCATACAAATTTTCGAGACTTGCATCCCCAGGATAAGGCAGCTCATCCCAGCGACGTTTTCCAAATCACGATTAATCGAGGTCATGATTTATTGATGGGTAAGGTGGGTGGACTCCTGCAGCTTTCAAAAGCGATTCAAAAGATTCTTGTTCGCTAATTTCACCAAGATAATAAGCGGCAAGGATTTTTTCATCTTCTGGAGTTCTTGGTTGCCCTTCGATTTCTGCGCTTGCTAGATCATTGCGAATCTGTCGTAATTGGTCTTCGCTAATGCGTTCAGTGGGATTCATCATGTCCATCAGTGCTCGTTTCTGGTTGTTCAAATCCGTTTTTGTCAGAGTTCTTGGAAGCCGCCAATATAGCAGGAACTCCTTTGGTGCTTAAGGAAAAAGAAGATGTGAGGAAGGACTGAGACTTTCCCAAATCAAGGATCTTTTGCATGGTAGCCCCAGCAC # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 107321-106699 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019662.1 Corynebacterium ulcerans strain 0211 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 107320 36 100.0 37 .................................... GGTGTTGAGCTTGCGCGACTACGCAATATTAGCGAGG 107247 36 100.0 35 .................................... GGGGGTATCCCCACCGACCCACGACCCCTTACCGA 107176 36 100.0 37 .................................... ACGGCCGTAAGTGACCAGTCGATGCGGTCATCAGCGA 107103 36 100.0 36 .................................... TTTCTCGGCAACTTTTGCCAGCTGTTTTAACGCTTC 107031 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 106956 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 106881 36 100.0 37 .................................... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 106808 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 106734 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2038335-2040684 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019662.1 Corynebacterium ulcerans strain 0211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2038335 29 100.0 32 ............................. AAGCTCCGGGCGCTGCTCAAAATCAATATTTG 2038396 29 100.0 32 ............................. GTAATTAACGAAACCGCATCGGGCGGGCGCGG 2038457 29 100.0 32 ............................. CACCGCCGGGCAGCACTCCCTCAAAGCACAAG 2038518 29 100.0 32 ............................. GGATCGGGCGCGGGCTGCGATTTCGAGCGCGG 2038579 29 100.0 32 ............................. TGCTTGCGGATCCTTCGAGGTCACGCTCTCGT 2038640 29 100.0 32 ............................. CCGCTAGCTTTGGTCGCCGCGCGGCGGCGGTC 2038701 29 100.0 32 ............................. CCCTGGAAAAGGAGAAAAAGTTGAATAAGGGC 2038762 29 100.0 32 ............................. CAAGCCCGATCGGGATCCTTCAAAAGCACATC 2038823 29 100.0 32 ............................. CATCGTGGTAACAGACTTTTTCACCTCAAGCG 2038884 29 100.0 32 ............................. TTCTTTCCCTGCCAGCAAGCAGCTGTATTCGA 2038945 29 100.0 32 ............................. TTTTGTCCTCCACTACCCGGATGGTGACGTGG 2039006 29 100.0 33 ............................. ACCAACGTCCGTTTCGATGAATTCTTCCAACGA 2039068 29 100.0 32 ............................. GCCTTAGCGAAGCTGCCCGCCTCCAAGGGTAT 2039129 29 100.0 32 ............................. AAGTTTTCCCTGCTCTGAATCAAGCCGCTTGG 2039190 29 100.0 32 ............................. GCAAATCTTCAAGAACATCTTTGTCCAAGGTC 2039251 29 96.6 32 ............................T GAGCTGGGTTTTGTGGCGTCTCTTTCTCGTCG 2039312 29 100.0 32 ............................. TCCGCATCGTCGTAGTCACCCCTGAGGTAGTC 2039373 29 100.0 32 ............................. GGGCTCGGCTTCGGTTTTTCGCATTCCTGCGA 2039434 29 100.0 32 ............................. GTATCCTCCGTGGTCTTTGGTTTTGTCTTTTT 2039495 29 100.0 32 ............................. CGGAACGGCATGGGTCTACCGGTTTATAGGGG 2039556 29 100.0 32 ............................. GGGTGCTGGTTTAACTGGCCTTGATATTGCGA 2039617 29 100.0 32 ............................. GGGGGAAACACACGCCAGGTGCAGTTACTTGC 2039678 29 100.0 32 ............................. GCTTTTCTTCGAAATCATGCGGCAATTCTGAA 2039739 29 100.0 32 ............................. CGGTCAAAGAACGGTTTAGCTTCCCAGGCTGG 2039800 29 100.0 32 ............................. TGGCAAGGAATCCTCAACCAATTCGACGAAAT 2039861 29 100.0 32 ............................. TAAGGCCACGTCTGAATGGGTGAGCAATGAAT 2039922 29 96.6 32 ............................A CGTGCTTTATCGCCGCCACGCTCGCCGTGTGG 2039983 29 100.0 32 ............................. GCAGAAGAATTTGGAAGAAGCCCGTGAGGTTA 2040044 29 100.0 32 ............................. GGCGAAAAGGTAGCGGAGGAGTCCATGTCAAC 2040105 29 100.0 32 ............................. GGGGGATCAAAAAAATCCCCCACACCCGCCGC 2040166 29 100.0 32 ............................. GGCTAACCCTGCGGCGTTTGTTGTTGCTCGTT 2040227 29 100.0 32 ............................. GCACCATCAGGGAGATGGAAGACACCAGACTC 2040288 29 100.0 32 ............................. AAGGAAGAACAGGCGGAACTTGCAAATACCCT 2040349 29 100.0 33 ............................. AGCCACCCAAGAAAGAAGCAGCGCCCGTCCAGG 2040411 29 100.0 32 ............................. CCCCGGGGCTATCACCCCGTCGATGGGGAAGC 2040472 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 2040533 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 2040594 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 2040655 29 82.8 0 ....................A...AGC.T | A [2040674] ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.4 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGTTCAACATCAAGGATCTGTACACCGTTGGCAGCTAACACACGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //