Array 1 979886-981378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033226.2 Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979886 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 979947 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980008 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980069 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980130 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980191 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980252 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980313 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980374 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980435 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980496 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980557 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980618 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980679 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980740 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980801 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980863 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 980924 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980985 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981046 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981107 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981168 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981229 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981290 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981351 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997510-999474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033226.2 Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997510 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997571 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997632 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997693 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997754 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997815 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997876 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 997938 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 997999 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998060 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998121 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998182 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998243 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998304 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998365 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998426 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998487 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998548 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998609 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998670 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998731 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998793 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 998896 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 998957 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999018 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999079 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999140 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999201 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999262 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999323 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999384 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999445 29 96.6 0 A............................ | A [999471] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //