Array 1 1059783-1065637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063688.1 Erwinia amylovora strain 11-7 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 1059783 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 1059844 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1059905 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 1059966 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 1060027 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 1060088 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 1060149 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 1060210 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 1060271 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 1060332 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 1060393 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 1060454 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 1060515 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 1060576 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 1060637 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 1060698 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 1060759 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 1060820 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 1060881 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 1060942 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 1061003 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 1061064 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 1061125 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 1061186 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 1061247 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 1061308 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 1061369 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 1061430 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 1061491 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 1061552 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 1061613 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 1061674 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 1061735 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 1061796 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 1061857 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 1061918 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 1061979 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 1062040 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 1062101 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 1062162 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 1062223 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 1062284 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 1062345 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 1062406 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 1062467 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 1062528 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 1062589 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 1062650 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 1062711 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 1062772 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 1062833 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 1062894 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 1062955 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 1063016 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 1063077 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 1063138 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 1063199 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 1063260 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 1063321 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 1063382 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 1063443 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1063504 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1063565 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1063626 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1063687 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1063748 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1063809 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 1063870 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 1063931 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 1063992 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 1064053 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 1064114 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 1064175 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 1064236 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 1064297 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 1064358 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 1064419 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 1064480 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 1064541 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 1064602 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 1064663 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 1064724 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 1064785 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 1064846 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 1064907 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 1064968 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 1065029 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 1065090 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 1065182 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 1065243 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1065304 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 1065365 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 1065426 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 1065487 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 1065548 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 1065609 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 96 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1074677-1077697 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063688.1 Erwinia amylovora strain 11-7 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1074677 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 1074738 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 1074799 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 1074860 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 1074921 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 1074982 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 1075043 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 1075104 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 1075165 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 1075226 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 1075287 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 1075348 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 1075409 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 1075470 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1075531 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 1075592 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 1075653 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 1075714 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 1075775 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 1075837 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 1075898 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1075959 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 1076020 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 1076081 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 1076142 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 1076203 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 1076264 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1076325 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1076386 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1076447 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1076508 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1076569 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 1076631 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 1076692 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1076753 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 1076814 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 1076875 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 1076936 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 1076997 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1077058 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1077120 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 1077181 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 1077242 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 1077303 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 1077364 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 1077425 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 1077486 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 1077547 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 1077608 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 1077669 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //