Array 1 5432-7289 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIU01000009.1 Salmonella enterica subsp. enterica serovar Hadar strain 3146 3146_9_length_208964_cov_24.673, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5432 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 5493 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 5554 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 5615 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 5676 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 5737 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 5798 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 5859 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 5920 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 5981 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 6042 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6103 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6164 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 6225 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 6286 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 6347 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 6408 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 6469 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6530 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6591 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6652 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6713 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6774 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6835 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6896 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6957 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7018 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7079 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7140 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7201 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7262 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23971-25710 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIU01000009.1 Salmonella enterica subsp. enterica serovar Hadar strain 3146 3146_9_length_208964_cov_24.673, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23971 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 24032 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 24093 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 24154 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 24215 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 24276 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 24337 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 24398 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 24459 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 24520 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 24581 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 24642 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 24703 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 24764 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 24825 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 24886 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 24947 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 25008 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 25070 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 25132 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 25193 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 25254 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 25315 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 25376 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 25437 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 25498 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 25559 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 25620 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 25681 29 100.0 0 ............................. | A [25708] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //