Array 1 820-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXEV01000030.1 Proteus hauseri ATCC 700826 Sequence00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 819 29 100.0 32 ............................. AAATTGGCTGTAAATGGTCGCCAAAAAAATTA 758 29 100.0 32 ............................. GTGAGCCGAAAATCAGAAATATTGGGCAATCT 697 29 100.0 32 ............................. GTCTACGTTGGCGAGACACTCCGCCCCCCTGT 636 29 100.0 32 ............................. ATAATTTATTTTGTAAAAATAAACATGGGATA 575 29 100.0 32 ............................. TGAATATAGATTTCATTCGCTTGAGATATTCG 514 29 100.0 32 ............................. AAGAAATGAAGCGACAAGCTGCGGAACAGGCA 453 29 100.0 32 ............................. TCACTGCCCCGTTTTTTCAGCCACAATTCCAC 392 29 100.0 32 ............................. GTGGTAAATGCACACTTTCTGATGTGCTTTTA 331 29 100.0 32 ............................. GGAATTGGCAGGATTTACTCAGTCATGAATCG 270 29 100.0 32 ............................. AAATTTCATACTTTACGTGGGTTTGATGATCT 209 29 100.0 32 ............................. TAATGTTGCGATATAACCCGCCCACGAATGCA 148 29 100.0 32 ............................. CCAAAATAGATGGTCCTGTTGCACTATTTACA 87 29 100.0 32 ............................. AATATAGGTGTTGATGATCTTAATTTCCCAAT 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGTATGCACGGGGATAAACCG # Left flank : AGTTCCTAATGCCAAACCAGCCTTAGATTGCCCAGTTGTTTTCCCTTATGCACCAAACGCCGTATTAGTTGGTTTTTTAAGTAGTTTTGCGGCAGGTGTAATTGGCATGTTTGTGCTTTATCTGTTGGATTGGACTGTTATTATTCCGGGTGTTGTTCCGCATTTCTTTGTGGGTGCAACAGCAGGGGTATTTGGTAATGCAACGGGTGGACGTCGTGGTGCAATATTAGGTGCTTTTGCTCAAGGTTTATTAATTACTTTCTTACCTGTATTCCTATTGCCAGTACTTGGTGATATAGGGATCGCGAATACAACATTTAGTGATGCTGACTTTGGTGTTATTGGCATTCTATTAGGTATTATTGTTCGTTAATTTTTTCCAGCTTTAAACTAAACTAAACGCCTTACTTGGTTTAATTAAGTAAGGCGTTTTTATCTATTTTTTTGGTAAAAAAGAGAAGGTTAAATTTCTTTTTTATATTCAATCTATTATGATTAGA # Right flank : A # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17032-16213 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXEV01000029.1 Proteus hauseri ATCC 700826 Sequence00029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 17031 26 100.0 35 .......................... CCGCATACTGACTAATTTTTTCACATAAATGATGA 16970 26 100.0 35 .......................... CCGTTATCGAGGTCTCTTTGTCGTTTATCTGGTGG 16909 26 100.0 35 .......................... CCGTAGGTTTGATGGGCTTCAATGCTTGATGGTGT 16848 26 100.0 35 .......................... CCGTACCAGAACCATCATAAAATGTTGTGGTATAT 16787 26 100.0 35 .......................... CCGAAGAATACGACAACATCATGAAGCAAGATGAT 16726 26 100.0 35 .......................... CCTGATGGTTTACGGATTGTGAGAGAGATACAACC 16665 26 100.0 35 .......................... CCGCACGTGCTCGTGGCATTCCAACAATGGGTAGT 16604 26 100.0 35 .......................... CCGATACTGACCAGGACGTTTATTACCCCCGTAAT 16543 26 100.0 35 .......................... CCGGTCTACCACCAAATAATCTTTTGGCTTCATCA 16482 26 100.0 35 .......................... CCGTTTTAACCTCGATAGTTCAGCCATATTTTCTA 16421 26 100.0 35 .......................... CCGCTCTGGTCTGTTTGCTGTGCTGATAGCCCTTG 16360 26 100.0 35 .......................... CCGAAACAGTTTCTATCGTTGGTGACTACCGCATT 16299 26 100.0 35 .......................... CCGGGTATTTCTTGATCATCCCAATCTTGAGGCGG 16238 26 96.2 0 ..............T........... | ========== ====== ====== ====== ========================== =================================== ================== 14 26 99.7 35 GTGTTCCCCGTATACACGGGGATAAA # Left flank : AACATTAAATAAGCTGATCCCTTTAATCGAAGAGATTCTTTCGGCTGGAGAAATTTTTCCTCCGGAGCCACCTTCCGATGCTCAACCTCCTGCAATTCCCCAAGCGCGGCCTTTTGGTGATGAAGGCCATAGAGAAAAATAGCAATGAGTATGATTGTGGTTGTAACTGAATCTGTACCTCCTCGATTACGAGGGCGATTAGCGGTGTGGTTATTAGAAGTTAGGGCTGGTGTTTATATAGGTCATGTTTCCTCACGAATAAGAGAAATGATTTGGCAAAAAAATCAATGAGTTAGCTGAAAATGGTAATGTAGTTATGGCATGGGGAACAAATACTGAATCAGGCTTTGATTTTCAAACATATGGAGAAAATCGCCGTGAACCTGTTGACTTTGATGGCTTAAGATTAGTGTTATTTAAACCGCTAGAAGATGATGAATAATAGTTGGTAGAAATAAAAATGTTTTTTTATTTATTTAAATCAATCGGATATATTTAGA # Right flank : CCACATTTATATAGAAATCAAAATTAGAGATATCCTTTTCTCATTAAGTCCTATTTTCTTTCCTTGGTTACTTACAACCCTTATCTCCATTTTTTGTCATTGATAGCTTAATTTAATATCTAGAGCTGATAATGAAAAACTAACTAATTATTCTAATAAAATTACGATAAATCCATTTATGTCTTGTTTTTTAAAGAAATAGACACATTTATTTTAAAAAAGTAACAAGTGAATTTATATGTTTATTTTATGAATAAAAATACTTATTATTCTTGGTGAATATTCACTGTGTGTATATTTTCGTGCCTAATTAATTACAACAAAATAATTGGTTCAAGGTTTTACATCACAATCACTAAGGAAAAATAAGATGTCTTTTGGTTTACGATATCTTGCGTTGGTACCTCTTTTGGTTATCACTGCTTGCCAACAACCTATTAATCACAATCCATCTGTAACACAAACAGCGCAGGTTCAACCTGTGATTGTTAATAACTCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATACACGGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 210-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXEV01000051.1 Proteus hauseri ATCC 700826 Sequence00051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 209 26 96.2 35 .............G............ CCGTTCATATTGCTTGTACTTAATTGGAATCCATA 148 26 100.0 35 .......................... CCGGTGACCATATATGATTTACGACAGTTTTCTAT 87 26 100.0 35 .......................... CCGTCGGATTAAGAAGGCTGATAGCACTGTAAAAC 26 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 99.0 35 GTGTTCCCCGTATACACGGGGATAAA # Left flank : CCGCACTAACGTAACGTTGGTTAGTAATAAACGA # Right flank : A # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATACACGGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.70,-9.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //