Array 1 533585-532747 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUY01000032.1 Streptococcus oralis subsp. dentisani strain RH_70047_11 s_oralis_RH_70047_11_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 533584 29 100.0 48 ............................. TTTCCGTCACGTGCCATGATAATATCTTTCAAAGCTGGAAGATATTAG 533507 29 96.6 44 ............................A CCAATACTGAATACTGGGAAGTTAGTTGGGTCTTCTGATTTAGG 533434 29 96.6 51 ...C......................... TGTTTGCCATCGAAAAGACGAGTGTAATCAATTACAATTGAGTCACCTTTC 533354 29 96.6 39 ...C......................... GATGCTATATGTATTGAGTAATTTCCAGTTTTACCTTTA 533286 29 100.0 40 ............................. TCTTTTCTGAGAAGCCAGATACTGCGCTAACAATCATCTG 533217 29 100.0 43 ............................. GCTGTGTCTCCCCAGCCGGAAGTGTGAATTAGTTTTCCTCCGT 533145 29 100.0 42 ............................. TATTTGTATAAAGTCGGTATATGTATTTCCTCGGGTAAAAAA 533074 29 100.0 42 ............................. TTTTTTAGGAACCTGCGTTTCATCAATATCATTAGGCCGCGC 533003 29 96.6 51 ...C......................... AAATTATCATGATAAAAATCGATAATTTTACGATGTGTTTCGATATCCTGT 532923 29 100.0 41 ............................. GCGCCCTCTTTTAAGGCAAGTTTTGGATTTAGAGTTCCTCG 532853 29 100.0 49 ............................. ATTGAGTAAACTGTTGCGAGATTGTCGAGAATGCCAAAAGCAACAGCAT 532775 29 86.2 0 .........................GCTG | ========== ====== ====== ====== ============================= =================================================== ================== 12 29 97.7 45 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : AGTTTCTGATAAACTAAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATACCTGCTTCCGGAACTTTGCCCGCAGGAGCAGGCGATTGAAATCTACGAATTGCTGCAAACCTCACTCTATATCGAGAAGCATATCAATCTCCTAGATAGTCAAATCAGAGAACTGCATGATATCAGCCAGACGGAAGCAAGTAATAAATTGAATGACAGAGTATTAGTACTAACCGTTTTAAGTATTGCATTAGCAATCATTCCGAATATCAAAGAACTGCAGGAACACTGTCTGACGATTTGCAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTTATCTATTTCAAAAAGCGAAAATAAATGTAGATTATCTTGACATACGATCTTCATCACAAGCGCGTGCCTAAGATTTTGCAATCTTGAAAAAAGCCCTGTTTTTTGATAAAATCAATATAGAAACAGCGATATTACTGTT # Right flank : TGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTTGTAAGAATTATCAAGAAAAACTCTCTTAGTGACCTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTTGGGGTCAGTACATAGTAGGAGAGTTTTTCCGTGTTTCAACCACAGATAGTATAGAGCTTAAGTTAGATGGCTGATCAGTTTTTTGTTACTTCACAGTGTCGCGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTCTTTTCTACTTCATTTATCGAAAAAGACCTGCAATACAATAGCCAATCCTACTGTACTAGTCCTTTTTCAGCTTATCTATGGTATAATAGAAGATAGATTTATCAATTGGAGAATAAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTAGATGGAGAGGGGCGGTTTGATATGGAACGCCTTA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 537334-535262 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUY01000032.1 Streptococcus oralis subsp. dentisani strain RH_70047_11 s_oralis_RH_70047_11_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================ ================== 537333 29 100.0 49 ............................. TTATTTCATCATGAAATTCGATACAATTCGGATTGATAGTGCTTAGAAT 537255 29 100.0 46 ............................. TTTTCCTTAACGTAAGCCTTATGGTATTCAACTTCCAGCTGTTTTT 537180 29 96.6 47 ...C......................... GCGTTGAATGCTGCTGCAAAGGCTTGTGCATTCTTGTTACGTTGAGT 537104 29 89.7 45 A..C...........A............. TTGCCACTTTGAGTGATGTTAGCGCCAGTAGTGATTTTCGCTCCG 537030 29 96.6 51 ...C......................... ATGCGACCCTCTGACTGGTCCATCACACGATAGGAATAATTCAGGGAAAAG 536950 29 96.6 96 ...C......................... GTGTCATGATAATCACCGTCAATCTTTATAGCATGATACTTATCACCGTTCTACCTTACCTTCTGCATCTTTAGTTGTTTTAATCTTAACAATAGG 536825 29 96.6 41 ...C......................... TGTTCTGAATTTCTGCTTAATCGTTTCATGACCTACGTTTC 536755 29 100.0 49 ............................. TTCAGAACCCACATATAGAACTCACCTTTTGGTGACAATCCTGCTTCTT 536677 29 100.0 50 ............................. GTACGTTCTTTTTCAGAAAGAACATGGTACATATTAAAGAGCGCTTTAAC 536598 29 96.6 46 ...............A............. TATTTACAGTCCGCTGAATTACCAATTATTCTACCGGCCCTATTTT 536523 29 89.7 46 ...........T.C..............T TAGCAACAGCCCCAAGAACAACAGTAGAGATCAAAGCGATACCAAA 536448 29 100.0 55 ............................. CTTGTCCATATCTGATATTTTAGTAATAGCTATTATCACGCCTGAGGCTGTGACT 536364 29 100.0 50 ............................. GAAAATACTCATTGAGTATAGCTGGATGTGCTCAGTAGCAGCTGAGTAGT 536285 29 100.0 45 ............................. ATGTGTTTCTACATCTTGCTCGATTTGTTCTGCGCTTAAATTTTT 536211 29 100.0 49 ............................. GCCTTGTTTCTTTTTCTATTGCACTAAGTTCTTTTATGTTTTTTAGTAC 536133 29 100.0 45 ............................. CTATTAGAATATCATGGATTCTTGCTAAAATCGATGGCTCTTCTG 536059 29 100.0 37 ............................. TTATCTTCGACAATTCCAGTTCTGTTGCAGACTTCAC 535993 29 96.6 39 ..A.......................... GCAAACTCTGTTGACTTGTTTTCATCACTTGCACTTTCG 535925 29 96.6 46 ...C......................... TTCCATTTGTGGAATAACTTTCTCAGCCACCCAAGGGTTTACTTCC 535850 29 93.1 32 ...........................TT GCTCACTCTCTGTCTCCTTTGTGATATAATAG Deletion [535790] 535789 29 93.1 40 ..A..............G........... GTTAGAGTCCCAAGATATTTACTAGCACCTTCTCGGAATA 535720 29 96.6 41 ..A.......................... CTTCTTCGGCTTAGGGATTTCGATGTTTTCTTTCGGAACCC 535650 29 93.1 46 ..A............A............. TCAACGTTTTGAACTTTAAATGGTTTGTTGAAGAAATCGTAGTCGA 535575 29 96.6 43 ..A.......................... TATCCATTATCAGGATTTTCATATACTTCACATCCATATACAC 535503 29 96.6 42 ..A.......................... TTTTTTCTGATAAATTCCAATGAGTGTAAATAGCAATACTAC 535432 29 93.1 42 ..A........................G. CGTCAATTCTGATTTGACTGCAATTCGTTCTTCCATTGGAAC 535361 29 96.6 42 ..A.......................... TTTATTTAGAATACCTTGAAGATATTCTAGCTCCTCTTGATC 535290 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ================================================================================================ ================== 28 29 96.4 47 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TGGAATTCATTACACCTCATAGTGACATTATCAAGAGTCCTATTCCAATCAACTGTCTGAAGGTTAAGCCTGGAATCTCTTTTGAATTTGGCTTTTATCTGAATGAGTGTCAGCTTTCAGATGGAGTTCAAATTACGGTTAAAGAAAAAATAGAGTTATTTAAAACTATCTTGACTGATGTAGGCATTGGCGCCAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGCAGAAGGGTATTTACAAATCGTATCTGAGGGAGTCGCGCAACTCAGATAGCTCGAAAGGGTATAGAGGAGTTTGTTCATATTAAGGAGCCTGAATATAAGAACGTATTTACAAAGAGCTTAGAAACAAGTGAAGTTAGCTATCGTACAGGAGTTCAATCTTAGTTGGCAAGAGCGCTAGGACAAAAAAGATCGACCGACTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTTGTT # Right flank : CTTCAACTGAAAAAACTTGCGAGAGCAAGTTTTTTGTGGTATATTGGAAGTGCTTTCATGTTGAATGTCTTTATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGAAGAAACTCAGCCAAGATGCCAATGAACTCCCCTATCTGAACGTAGAAGATGGTGAAAAAAGCGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTAGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATTAACAAACTTGAGTGTTATGACCTGACGCTTGACTATATCATGCTTCGTTATTTACCAAATTTAGAAGCAGGTTTCCTGATTTTCTCAATGGAAAATCGTCTCTATGATAAATTG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 701183-698313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUY01000032.1 Streptococcus oralis subsp. dentisani strain RH_70047_11 s_oralis_RH_70047_11_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 701182 36 100.0 30 .................................... AAATTCCTTAACAGCTTTCACCAAAACAGG 701116 36 100.0 30 .................................... AATATGATAAACTCATCTTCTCCTGTATCC 701050 36 100.0 30 .................................... GCCTGTTCCCATCAGATACACTCCACTTCA 700984 36 100.0 30 .................................... TGGCTCTTATGCTCGTAATGAGATTGTTCA 700918 36 100.0 30 .................................... ATTCAAGCTGAAATGGAAGCGCAAGAGGAA 700852 36 100.0 29 .................................... AGGGTTCACCATTTCTTCATACTCGTCTT 700787 36 100.0 30 .................................... GTCGCTCGATTGCTCGAGCATGTGAACAGT 700721 36 100.0 30 .................................... CACCTTTAGGTGTGAGCGTTACGGTGTCCA 700655 36 100.0 30 .................................... TAGCCTTCATCATTGAAATAGTACCATACA 700589 36 100.0 30 .................................... TTTACATAGGCCAAGAATACCGCTACAAAG 700523 36 100.0 30 .................................... ACTACGACACGTCCGGCGAAGAGGTAACGC 700457 36 100.0 29 .................................... TTAAATGAACAACTCCGTCGAGCGTTTTA 700392 36 100.0 30 .................................... CTAACGACCAATACGACGTAGCGAAGCGCA 700326 36 100.0 30 .................................... CCTTTGTCAACCAAGCGACAGGGCGCTGTT 700260 36 100.0 30 .................................... GAAAGTGGGCGCATGAGGGTAGAGCTGTAA 700194 36 100.0 30 .................................... CAAAGTATTCAATATTGGCATTGGTTGAGG 700128 36 100.0 30 .................................... AATGGCGTTCTTCCGTGAATCAATGCGCTT 700062 36 100.0 30 .................................... TACAAAACTTGACTTCATTATTTTAACTAG 699996 36 100.0 30 .................................... TATTTCCCTAGCATGGACGGTATACGCTGG 699930 36 100.0 30 .................................... GGATTGTTCTTCTTGTGTTCAATCCACCTC 699864 36 100.0 30 .................................... CTGAAAACTCCGCTACCAATTGTCTTGTTT 699798 36 100.0 30 .................................... TATTACTCGTATTCAGACGAGAACACTGCA 699732 36 100.0 30 .................................... ATAGACTACCTAAGTTCAACTTCGTTCCAT 699666 36 100.0 30 .................................... TTTGTCATAGGCTGTCCTCCTTTGCTTATA 699600 36 100.0 30 .................................... AGAAGTTCGTTCAGCGTCATTGGTCTTTTC 699534 36 100.0 30 .................................... GGTTAGGGGATTTAAACTCCCAAGATGCAA 699468 36 100.0 30 .................................... CGGAAAACTCAGCTACAATTTGTCGCGTCT 699402 36 100.0 30 .................................... TTTTGAACCCTGAATCCTTAAATCCTGCCA 699336 36 100.0 30 .................................... CTGCGGATATTCATTCGCCATCACGGATGT 699270 36 100.0 30 .................................... CATTTCCCGAAGGTGTCGTCGGTACAACCG 699204 36 100.0 30 .................................... AGAAGAATGCGTTTTCAACATCAGTGTATT 699138 36 100.0 30 .................................... TGATAATGACTCCAAGGCCTCCCATTTCCT 699072 36 100.0 30 .................................... GAGACTCTCAAGATACTCAATAGCTACTAA 699006 36 100.0 30 .................................... ACCTTCACCTCTTCTTCGTCCGTACCTTCG 698940 36 100.0 30 .................................... CATTTAAATTTCTATAACCATTAGTGTCTT 698874 36 100.0 30 .................................... TTGCTAAAGGGATGGCATCCGTTTCTGGAT 698808 36 100.0 29 .................................... TTTGATCCGTGAATCATCTCTCAAACCAA 698743 36 100.0 30 .................................... AAATCATGAGGGGGGATTCCCCTGTTTTAA 698677 36 100.0 29 .................................... TTTGATCCGTGAATCATCTCTCAAACCAA 698612 36 100.0 30 .................................... AAATCATGAGGGGGGATTCCCCTGTTTTAA 698546 36 100.0 30 .................................... CAATAGACCACATATTTGAATACATACCAG 698480 36 100.0 30 .................................... CTCGTAAGTCATTTGGACGCTCAGATATGA 698414 36 100.0 30 .................................... CCGTTACCACCAGCTAAATCATACTTCACA 698348 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 44 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATAAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTCTTGAGGGCACAAAAATCAAAATTGACGAATTTGAG # Right flank : TGCAATTCAATTTATTGATTTACTCTCATTGTGATATATTCATACAAAAACCGCTCTGCTGAGCGGTTTTCGTCTATTCTTACCTTTTGCTACAATACCCACGTACGGATGGCATGGGCGACGCCAGATTCGTCATTTGTTTTAGTGATGTATTTGGCAATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACTGGGTTACCAACGACTTCGAGCATGGTGCGGTCATTTTCTTCGTCACCGATCGCCATGGTTTCATCTTTGGTTAATCCGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCCTTGTCTACATTCTTTTTAAGGAGCTCAAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATCGCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGCCATCCATTTCTTCAGGAGTGCGGTAAAAGATAGGCATGTTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //