Array 1 2252-190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGER01000031.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 2251 35 100.0 34 ................................... ATGACACAATTAATATGCGTACCCAGGCATATTT 2182 35 100.0 35 ................................... AATGTTAACGCAGAGGAAACTCTGAAACTTAATAT 2112 35 100.0 37 ................................... AAAATTGAAACCGGTTGACCCGACAATTCCGGGATAC 2040 35 100.0 34 ................................... ATCGGTCAGCCTGGAGATGAACTGGTCGACTTTG 1971 35 100.0 37 ................................... ACTATTTTGACAGACGAATTTGCCAGTCAATTTAAAA 1899 35 100.0 35 ................................... TTCAAAGATGGTGATACCGTCAACATTGACGATAT 1829 35 100.0 35 ................................... AGGCATTAAAAGACATTTTACACGGCGCTTTTATC 1759 35 100.0 35 ................................... CTACATTTGAAGAAGTGAACAGCTCTAACACCTTT 1689 35 100.0 36 ................................... ATGAAAAAAATTCGAGCTAAGAAGAGAATAAAAGCT 1618 35 100.0 35 ................................... TCTGTTAAAGATTGTTCTTCTAATAAGGTGGTTAA 1548 35 100.0 34 ................................... GTAAAATCAGTACAGCTAAAAATTGAGCTAAAAC 1479 35 100.0 33 ................................... AATATTTGGAATGGTACAATGGATTTGCTTAGC 1411 35 100.0 37 ................................... TTCTTAAAGGCAGAAAAAGAAGCTTAAGCTGGTACTC 1339 35 100.0 34 ................................... TTTATTTTGGTGGCAGCTATTTATGCGATTTTGT 1270 35 100.0 35 ................................... TTTTATTTTAATTTTTCTTAGATTGTAATTATCAC 1200 35 100.0 35 ................................... AACGGTTTAGTAGGAATGATTATCGGCGGTTGCTT 1130 35 100.0 34 ................................... TCTGAAGGGATGTGTAAGAAAACTAAGGAAACGC 1061 35 100.0 36 ................................... ATTTACCTGTTTGCCCCGCATTATGGACTGGCAAGA 990 35 100.0 35 ................................... TAAGTTTATGCTACAAGTTCAATCTTAACAAAGCC 920 35 100.0 35 ................................... AAAATTTCAGCAAAATTGAAGGCATTATGACAATT 850 35 100.0 34 ................................... GAAGATAGCGTTATTTCCTCAGGGAAGCTGTCTT 781 35 100.0 36 ................................... AAAAATAAATGCGCAGGAAAATATCCGCGCCGGTGT 710 35 100.0 34 ................................... ATTTCTTCCCCAAAGGAAGCCCAATTAGGTTGGT 641 35 100.0 33 ................................... AGTTTATTGCCAAAGGCGGTTTCATCAATGTTT 573 35 100.0 36 ................................... ATCAAGTTAGATGACGGGGTTGCGTTCAAAGTCTAT 502 35 100.0 34 ................................... GACTGCCGCCTTCAATCAGTGGAGTTTTTCTTCA 433 35 100.0 36 ................................... TTTCAATAAACTACATGGTCGAAGAATGTGATGATT 362 35 100.0 33 ................................... TTATGAAAATGCTCAAGGCACTGTTTCTACGGC 294 35 100.0 35 ................................... TATGCAAGTGGTTCTGATTATAGAAAATACGAAAA 224 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 30 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 109525-108981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGER01000033.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 109524 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 109461 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 109396 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 109330 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 109267 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 109204 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 109139 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 109076 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 109010 29 93.1 0 .........................G.C. | A [108986] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 746-2243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGER01000049.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 746 47 95.7 29 ...A......A.................................... ATCTTCGCCGTTCCAAAAGTCGCAGTTAT 822 47 100.0 30 ............................................... TTCCGGTTAAAGTTGACCTGCTATTGTCTC 899 47 100.0 29 ............................................... TAAGTATCTGCCATAGTTTTACCAATCTG 975 47 100.0 30 ............................................... CTAAGACATTTCTTCCGAGCGTAGCGAGGC 1052 47 100.0 30 ............................................... ACAGGACGAATTGCGTATCAAGCAGTCAAC 1129 47 100.0 29 ............................................... CCCATGCGCTGCAAGGTAAGTAAGGAAAT 1205 47 100.0 30 ............................................... AGCCAGGGCTTCCTGATCTGCCAGCGGTAC 1282 47 100.0 29 ............................................... TAAAACATTATCCACATAGTCCTGAAGCT 1358 47 100.0 29 ............................................... TATGCCAACTGGAATAAAGATCTTTGGAT 1434 47 100.0 30 ............................................... TGCAGAGCCTTTGCCATGCGTGCCACTCTG 1511 47 100.0 29 ............................................... GATAAGATTTTCCATATAAGGCCTGTTAA 1587 47 100.0 29 ............................................... AAGAAGAAGAAATTACCAATTTTGAAGCT 1663 47 100.0 30 ............................................... TACTCAGCTGGCGTACCGCCGCTTCGGAGG 1740 47 100.0 29 ............................................... GCGATACGGTTATCACCAATGACGATTTA 1816 47 100.0 29 ............................................... AGGGTCAGCGGCCCAGCGATCCATCTTGC 1892 47 100.0 29 ............................................... TGAGATGTCTATAGAACCATCAAAACCGC 1968 47 100.0 30 ............................................... CAAAAACCTTAGATGTGACTAAGAAAGTGA 2045 47 100.0 29 ............................................... GGGAGTTACGCAAGGGCAAAGCTACCGTA 2121 47 100.0 29 ............................................... AAGTTCCAACTTGTCACCATTCATCTTAA 2197 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 20 47 99.8 29 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGCTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTCACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //