Array 1 13942-14406 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBE01000002.1 Streptomyces filamentosus strain JCM 4122 sequence2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 13942 29 100.0 32 ............................. ATGCGCACGCGCTTGTTCTTCTGGAGGTTCGC 14003 29 100.0 32 ............................. GTCCTTCGCCCATCGGCTGGCGTGCCATCCGC 14064 29 100.0 32 ............................. TCTCTCGTGTCCCAGACCGACACCCCCACCGA 14125 29 100.0 32 ............................. CGGACGTGCTCGATACGATCCGACACAGGATC 14186 29 100.0 32 ............................. ACCGCCATGCACACCGCCGGCCTCGCCATCGG 14247 29 100.0 41 ............................. CCGGACGTGGGCGACGTCGTCGACGCGTGGCTGACGCAGCC 14317 29 96.6 32 T............................ CTTCCTCCGGAGCTGTGCCCGCCCGACCAGGT 14378 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ========================================= ================== 8 29 99.2 33 CCGGGGTCCTCGCGCGCAGGGACGGTCCC # Left flank : TGAGACCGAGGGCGTAGTTGAAGCTGCACCGGGAGGCATCGGCGTAGCGCTGCAGGATCACTACCTGAGCAGGGGTGGGGTCCAGGGCCTCTTTGACCACGATCGTGACTGTTTCGCTCATGCGTGCACTCTCGCAGGCACCACTGACAAACAGAGCATAAGGGTGAATGCATACTCAAATGCCAAGCTTTGACGCTGCGAGAAACTACAGTCAGGGCTGTCCCTCCCCACAGGAGAGGGAATCGTCCCCCGGACGGGGGAGTAGAGCGCCCGTGGACTGCACCAGCCGCAAGGCAAGGGCAGGAGACACCCGGCCGCCCACGGCGAACGGGGAAGAAGCGGGCAGGACAGTTGGGCAACCAACTGCCCGGCGCGGCCGGGTAACCGAGCCGCCCGTCCCAACGCACCCGAGAAAAACACGCGGAATACGGCTTTTGCCGGAAACCCCAAAAGTGGTCGCCCACACGCACTCCCTGGAAGAAACACCCAGGTCAACAAGT # Right flank : CACCAGCGGCCGGCGGTTGTCGGCGCAGAACGGACCGAGAGGCCCGATCGGGACCTGCGGCGCGGCTTCGGTCGGGGGTGAAGACTCTAGGACGCTTACACGAGCACGAGGAGCAGGAGGGTGAGGGCGGCGGCCAGCGTCCAGGTCTGCCACCAGGTCCACCAGGGCGGGGGACACCGGCGTCGCCTTCGGCGGCGATGGGCGCTCATGGGGCGGGGCGGGTGGTGGGGGAGATCGGGGCGGGGTTGGCGAGGGCTGAAATCTCGGTGGTCCACTCCGTGCCGCCGCCAACTGGTAGCAGCCACGCTCGCAGGCCAGGGGCGTCGCCTTCGGGGGCGATGGCGCGCAGGATGCCTCGGCGGCCGGTGGTGGTGTCCTCGACGTCGCGGCCGAGCCAGCGGTGATGACGGTGCAGCAGGGTCATGGGGTCTCGTCTCCCGCGGGGTGCGGGCCGCTTGGGTCTGCGGGGTGGAGGCTGTCGAGTTCCGTGTGGAGGTCGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGGGTCCTCGCGCGCAGGGACGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 248483-249188 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBE01000002.1 Streptomyces filamentosus strain JCM 4122 sequence2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================ ================== 248483 30 86.7 31 ............C....A........T..G GTCTTGCGAACTCGGCTCAGGAGGAGCTCGA 248544 29 80.0 31 T.....T.....CG..-.....C....... TGGCCGCCTACCCATTCCCCTTCGCGGTTCC 248604 29 80.0 31 ........T..-.......A..G...T..T CCCGTTCCATGGCGAGGAGTTGCTTGGCCGC G [248618] 248665 30 73.3 80 .........A....T......T...CGGGG GTATGGGCGTGTGTTTTGTCTGTTTCGGCGGAAGTTGCTTGTGGAGTGGCTGGTGTGGGGTAGAACTGCTGGTCAGGAAG GT [248684] 248777 30 93.3 31 ............CT................ GGCCGCTGGCGCCGGCGGCGACGACCAGGAC 248838 30 93.3 31 ............CT................ TACCGCTCTCACGAAGGTACATCACTCACCC 248899 30 93.3 31 ............................TG AGGGCGGGCGCTTCCTGGTCCGGGGGTCAGC 248960 30 96.7 31 .............................T CTCATATGCGAGCCGGGCCGACCTGTGAGAA 249021 30 96.7 31 .............................A GCTACGGGGCGTCCGCCCGGTTCTTCGGGGA 249082 30 100.0 46 .............................. TGGAGTGCGCCCCCGCGATCGGCGCCCTCCAGGGCCTCGCCCAGCG 249158 30 100.0 0 .............................. | G [249175] ========== ====== ====== ====== ============================== ================================================================================ ================== 11 30 90.3 38 CTGCTCCCCGCGTCCGCGGGGATGGACCCC # Left flank : TCCGACCCGGATGACGGCGCCCCCGTGTGGGCGACGGTCTACGAGGGTGCGGACTCGCTGCTGTCGACGCGCGGGCAGATCATGGTCCGGCAGCTGCTGGGGGCGGACTGGCTGGGGGAGGCGTCGGCCTGGTACCAGCTGATGACCCCGCTGGCGGGGCCCGTCGCCGACCCCGTCGACCAGGTGCAGGTGATCAGTGAGGACGAGCAGTCGGCGTCGGCATTCGTCGGACGGACCTGGTTTGTGGAGGCCCGGACGCAGGTGTCGACGGTGGAGGTGGTGCGGGCGACCCGGCTGGACGAGCAGAGCGGCGCCGTGGCGGTGGGCATATGAGCGAGCAGGCTGAAGCGCTGCACCGGGTGCGGATCGTGACCCTGGTGGGGCAGCCGACCGTCGAGATCGATGGCGTGGGCGTGTCCAGCCTGATCAGCGCCTACCACGGCGCCGGGCAGCACCCTCAGGTGGTCCTGGAGGTTTCCGGCCGCTGGCCGGCGGAGCAG # Right flank : CGGCGGCCCTCCGCGAGCCCCTGTTCACCGTCCGCGTGGTCGAGGTCCAGGTCGTCAACGTCGCCCCCTGACCAAGCCCCACAAGGGAAGCGGGCCGTTCGCACAATTGGAGCAGAATGATCTTGGCCGTGCTTACCGCCGGACTTACCACCGCACTTACCAAGCCGTGGCCCGCACCGCTGTGACCTGCGAGGGTCAGTATTTGGGTCACTCCTCCGCTCGCCCCCGGCCGGGGCCGCTCCTCGACCGCCAGGACGCCGCCCTGTCATGAACGGCTTCCGTTGGACCCGGGCGAACGGCGGGAAGTGGCCCCACCTCTCGAACGGGTAGCCGGCGGCTCGCCCGGACCCCAGACGGCCTCTTGTCGCTGGCTGCGCTTGTGCGCGGGCCACCCGCAGGCCCGCCAGTCGAACGCTTGGCGGAGCCACTTCTCACCGTTCCGGTGGGGCCACCGGAGACCGTCGCAGACACCACCCACCCCCGGCCGGGCCGCCCCCTGC # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTCCGCGGGGATGGACCCC # Alternate repeat : CTGCTCCCCGCGCTCGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 278657-279545 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBE01000002.1 Streptomyces filamentosus strain JCM 4122 sequence2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 278657 29 100.0 39 ............................. CGGGCCAGCAGCCCGATCAGTCCCTCGCGGAGGAGGACG 278725 29 100.0 32 ............................. CGCCGCGCGGACGGGACGGGCGCTGTCTCCAT 278786 29 100.0 32 ............................. TGCGCTTCCGTGAGGACGGGCTCGGGGACGTC 278847 29 100.0 32 ............................. CTCGTCGACCACCGCCACTACGCCTACCGCGG 278908 29 100.0 32 ............................. ATCTACGCCCGGCTCCGGTCGGGGCTGACCGC 278969 29 100.0 32 ............................. TCTCCCGGGTGGGCGGCCGGTACGAGCATTCG 279030 29 93.1 32 ............T............A... GTCGAGTCGAGGGGCGGTGACGGCGTCGTCGT 279091 29 86.2 32 ...........CT............A..T GGGCCCGGACCGACAAGCTCCGCCGTGAGCAG 279152 29 89.7 32 ...........CT............A... GTGCCCATCGCGACGGCGACGGCCACGCGTGC 279213 29 93.1 32 ...........CT................ AGGCCTCGAAGCTGCCGTAGCCCTCGGGGCGC A [279231] 279274 29 89.7 32 ...........CT............A... GGCGGCCACAAGCTCGTCGAGGAGCGGGCCGA 279335 29 82.8 31 ..A.....T..CT....A........... CGGGCAGGAGCGCGGGATGTTCGCCGAGATC A [279360] 279396 29 86.2 32 ...........CT...T........A... TAGCACTCGAACACCTGGTCACCGGGGCTCGG 279457 28 79.3 32 ...........CT.-.GC.......A... AGTGGCTGGACCAACGAGACAGGGCCAACACT 279517 29 75.9 0 T..........G.TT..........AGT. | ========== ====== ====== ====== ============================= ======================================= ================== 15 29 91.7 32 CTGCTCCCCGCTCGCGCGGGGATGGCCCC # Left flank : TGCCTCTCGCCGCGGCCTCCAAGGTCGCGAGGAAGCTGTACAGCGCCCCACGGCCAACAAGCCGGCCAGGCGCTGGAGGAGGGAGCTGAGGGCGGCACCAGCGTGGGGAGCGGCGCGTTCTCCCGCCCCTTCCGCCCTCTCGTGGCCGGTCAGGCGACATCCCTTGAGCGCTGCAGTTACTTTTTCAGCAACAGCACCCGGGGCTGAGGTTGCCTCCGTCCACCACACATGAACATCCAAGGGTGGTGCCGCTCAGGTCTGCGGGCGGGGGCGCGGTCAGCCTCCCCGTCCGCCCGGTTCTCCTTGGCGGGAGCGGCTCTCAAGGCCACCGGGAGCTCCAGCGAACGGCCGGCGACGTGCCCGGGCCCCAAGAGGGCCGGGGGTGGCGCGGGGCTGGTAGGGGCCGCTCGGGGCCTTTGGAGAGGGTGGGTGGTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGGGGGCTGGTGTGAGGTAGAACTGCTGGTCAGCAAGA # Right flank : CGGAATCTTGCTCGCTGTTCCTGGGGGTCCTGGTTGTTCTTCATGTGTGTCGCTCGGTGGCAGTCGGTCGTGTTGTTTCTCGTCTCCAGGCGGGTGGCTTTGGTTTCGCCGGTCGGGTCTTGTCCGGCGCGGGTTGTTCTGCGGGCGTGCTGGGGTGGGCTTGTGGTGGTCTTTGCGTGGGTCGGCTGTGTTTCTTGTTTTCGTGCTGTGTCCGGGTTGGTCGGCAACTGCATGACGTTACGTCATTGGGCTTCGTGTTCGGTGTTGTTCGTGGGATCTGCTGGGGTTTTTGGTCTTGTTTCTGGATCTTGTGTCCGTGGTGTGGAGGTGGGGTGTATTCCTCTTCCATGGCACGTGAGGGGGAGGGCCGTTCGGGCCTTCGGAGCCGTCTTGAGGGACCGGTGCTTGAGCTGTGGGGCAAGCATGATCGGGACTCGGACGGGTGGCTGCCGTTATGGCAGCACATGGAGGACAGCGCGGCGGTGGCCGGGATGCTGTGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCTCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //