Array 1 18401-14174 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWU01000010.1 Neisseria subflava strain C2005001510 C2005001510_S5_ctg_1602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 18400 33 93.9 32 CT............................... TAGTTAAATTTTACTTGACAAGCTAAAATAAA 18335 33 97.0 32 G................................ AATCCTGAAGAAGCGATGGAAGCCTATGTTGG 18270 33 93.9 34 TA............................... CTTGCCATTCGTGCCGTGATGGAGTATGAACAGG 18203 33 100.0 33 ................................. AAATACTACAAGACGGCATTTGTCGGATTTTGA 18137 33 97.0 32 .A............................... GACAGGTGACACAATAGACGATGATTCATTAG 18072 33 97.0 33 G................................ ATGTTATCCAATACGTTCACAATTCACAATTAT 18006 33 93.9 31 TT............................... ATACAAAAGGTTAGGGTTGCCGATTGTTCTG 17942 33 97.0 33 T................................ CTCGCATTTTGCAAATCCTCTCATCGGCGTATT 17876 33 93.9 32 GG............................... TCTGGATTTGCCGCGACCTTGTGTAAAGATTC 17811 33 93.9 33 GG............................... TTGACAATCCGAAAAGCAAAACGCCAGCCGCTG 17745 33 100.0 32 ................................. GGGCGGAATCCGAATACCGTTGGGTGTACGAC 17680 33 97.0 33 T................................ GATGTGTGTATGTTACCAGCGGTTTTTAATTTA 17614 33 93.9 32 GT............................... TCCGTAAGACGTGCAAAAGGCCACCTGTTTTC 17549 33 97.0 34 .G............................... GCGGCGCGGCGTGAAAGGCTATCCCTACTCCACC 17482 33 97.0 32 .G............................... ATTTAGTCATGGATAAGGATGTGCCAAATCGA 17417 33 100.0 32 ................................. GCTTAGTGATATCCGTGTTTTCCTGCTCCAGC 17352 33 93.9 31 TT............................... GCTTAGTGATATCCGTGTTTTCCTGCTCCAG 17288 33 93.9 32 CT............................... TAAGGGGTGGATATGGCTTTGAAAAGTACCGC 17223 33 93.9 32 CG............................... ACGCACGGTAACTATCCCAGTCAAACGGTATC 17158 33 97.0 32 .A............................... CTTTTCGTTGTTTATAGACTGTTTACAGTCTG 17093 33 97.0 33 .T............................... TATGTGGGCAATCCCGCTGCGCAAATCAGCTTT 17027 33 100.0 32 ................................. ATGTATGCAAATATGCACAATACAAATATGCT 16962 33 93.9 32 TG............................... GCGCATAAGCCGCGACAACATCGCCATCGGTG 16897 33 97.0 31 C................................ GGGGTCTTTGCCTGTGTATTGGGACGGCGGC 16833 33 97.0 32 .T............................... TGTGTGGCTGTCGATGGAGTTTAGCCCACGAA 16768 33 97.0 32 G................................ AAAATCATAAAGAAGAGTTTGTGCGACAGTTT 16703 33 93.9 35 GA............................... GCATGGTGGCAGCAAGGTCAGACGGCGAATATTTG 16635 33 93.9 34 GA............................... GCGGCTTTTTTGTTGCCAGTATTGGATCTGTCGG 16568 33 97.0 33 T................................ GTATTTGTGCTTTTTGGCGATGGTCTCGATGAT 16502 33 93.9 32 TT............................... ATCCGCTTTGGCATTAATGTCCCTGAAGATTA 16437 33 93.9 32 CG............................... TTGCCGCGTGTCCTCCGATTGCGGTTTGAGCG 16372 33 97.0 32 G................................ TTAGGCGAGTACACGAAGAAAGCTAAAATCTC 16307 33 97.0 33 .G............................... AACAACAGGCGAATTTGGGCCATCCAATCCCCT 16241 33 97.0 32 C................................ CATAGGTCGGAGACGACGGCGTAGGGGACGGG 16176 33 93.9 33 GT............................... CCAAGCCCTGCCCAATCGGCTGACGAGACCGTC 16110 33 93.9 33 GT............................... AAGAATCAATGTTGTTGATGCCATCAATACTTA 16044 33 93.9 33 TA............................... AATGTTTTCAGAAATCGATTTGATGGTTTTTGA 15978 33 93.9 33 TT............................... CCGCGTTGGTAAGATTGGCAGCCGAATATATCG 15912 33 97.0 31 G................................ CCCGATGGCACAACCATCACGCCCGAGCTGA 15848 33 97.0 34 C................................ ATCGTTACATCGACTGGGCCATCCGCAAAGCGAC 15781 33 97.0 32 G................................ ACGCGCATGATGGATACAGAAAAAATCGCCAA 15716 33 97.0 32 .G............................... AGCAGTTTTTGGACATGCTATCTGTCGGCGTT 15651 33 100.0 34 ................................. AAGAAAAGCCTGTCTGAGTATAACGGCTCATTTG 15584 33 97.0 32 T................................ CAACGGCGTACAGAATGAGGGCGGTTTGCAAA 15519 33 97.0 32 C................................ AGGCCGACATGATGAAGCTCATTTGCCAGCAT 15454 33 97.0 31 .T............................... GTTCGCGAGTGGGAAGAACGCCACGACAATC 15390 33 97.0 34 .G............................... TGGCCAACCGCGAAGAGATGCTCTCAAAAAGAAA 15323 33 97.0 33 .A............................... GCCAAATACTCGCCATGCTCCGTGCATTTGCGT 15257 33 93.9 32 GT............................... AATATCGAAACAATCGACCAAACACCGCAGTT 15192 33 97.0 32 C................................ TACGGTCAACGGTGGGAAATGTCGGTTGATGG 15127 33 93.9 33 CG............................... AAGAAATGGTTACAAAGCCGTTGATGGGGATGA 15061 33 93.9 33 TG............................... CGTTACGGTAATTGTTGGTGTAGAGGATTTGCG 14995 33 93.9 34 TT............................... TGATTGAGCTGAGCGGTAAGGGTTGCAATGTTGC 14928 33 97.0 32 .A............................... AACAACAGGCGAATTTGGGCCATCCAATCCCC 14863 33 97.0 34 T................................ CGTAGTAATTTTGACAGACGCAATGCTGTCATGC 14796 33 100.0 33 ................................. GACAAGTCATAGTGATATACCAAATCAGGAACA 14730 33 93.9 32 GA............................... GCTAAGGTGCAAGGCTTGAAACGCTCTAAAGG 14665 33 93.9 33 TG............................... TCGCAAATAGTCGACTTCATCTTCTGACAAATC 14599 33 93.9 31 CG............................... CAAAGCTTCAAACACTTCATCCGCAGGTGCA 14535 33 97.0 33 T................................ GCCGTTGATGATGTCAAATAACGCCTGGATATA 14469 33 100.0 34 ................................. AGAAGCATTGATAACAACACATTCCCCTAATCTG 14402 33 93.9 32 GA............................... AGGTAGGCAGAAGCCGATAGCAAGACATCGAA 14337 33 97.0 32 .G............................... TCAGGCCATTTTAGCCAAACATTCATGTCTTG 14272 33 97.0 33 .A............................... CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 14206 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= =================================== ================== 65 33 96.1 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGCACATGGAAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTTTGGACTACGGCGTGCGCGTACAGTATTCGGTGTTCGAATGCGACATCGCGCCCGATCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGG # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //