Array 1 100515-100975 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAK01000003.1 Lactobacillus crispatus strain NCK953 NODE_3_length_110160_cov_40.109505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100515 29 100.0 33 ............................. ACCAGCAAAAAGGCAGTAGACATGATTAAGTTT 100577 29 100.0 32 ............................. AGCCACCATCATCGTAGTCATCATAGCCATCG 100638 29 100.0 33 ............................. GACAAGGTTGACCAAGCCGTTAAGACCATGCAA 100700 29 100.0 32 ............................. TAAAATAATTAAGGAGGGAACTCCAAATATCG 100761 29 96.6 32 ............................C AATTTCTTCCTTCGACATGTCCTTAAGAGCAT 100822 29 89.7 32 ...........ACA............... GACAGCTCTGCTGTAGTGATCGAATCAGACAA 100883 29 86.2 32 ...........ACA....A.......... AGAAGACAAGCGAATGTGGAAGTAGGCAACAA 100944 29 82.8 0 ...........ACA.........A..G.. | C,A,A [100966,100968,100972] ========== ====== ====== ====== ============================= ================================= ================== 8 29 94.4 32 GTATTCTCCACGAGTGTGGAGGTGATCCT # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCAATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTA # Right flank : TGCTCTGAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTAAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAGTTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 103699-104644 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAK01000003.1 Lactobacillus crispatus strain NCK953 NODE_3_length_110160_cov_40.109505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103699 29 100.0 32 ............................. AGGTTTTCGTCTGAATGGGAACGCGGCGGCTA 103760 29 96.6 33 ............................T CGTTGAGCCATCTTACCAGCCCAACCGCCAGCA 103822 29 96.6 32 ............................T GATGTGATGTAGATTTTAAAGTTTGAAGAGAT 103883 29 100.0 32 ............................. CGTCTTGTCTCACTTTTTAGTCTCCTTAATTC 103944 29 100.0 32 ............................. TTAAAAAACGTTGATGTATTTGATCAATCAGT 104005 29 100.0 32 ............................. CAAGTTAACGGTGCTATTGAAAGAGCCGTTAA 104066 29 96.6 32 ............................T GCTGATACAATGAAGCAATTTATAGCCCCTAA 104127 29 100.0 32 ............................. ATGGTCACAATATAGAAAAATGTGGCGTTTGT 104188 29 100.0 32 ............................. AGTCTGCAAAGAACTTAGACATTCTCTTGCTT 104249 29 96.6 32 ............................T GCTTCAGCAATTACATGAACAGCGCTACTTGA 104310 29 96.6 32 ............................T TACCACTTAAATCATCACCCATTTCAATTACA 104371 29 89.7 32 ...........AC...............T CCAATCATTTTACTTGGTGATGATAAAAACGG 104432 29 93.1 32 ...........AC................ TTGATTTGGAGTCAAGTCGTTTACCATTAACA 104493 29 89.7 32 ...........AC...............T GGATATTCTTAAATATATTGGTAATCATAAAA 104554 29 93.1 32 ...........AC................ AATCTAGTTTATGATACAATAAACACAGATAT 104615 29 79.3 0 ...........AC....T......T.A.T | A [104636] ========== ====== ====== ====== ============================= ================================= ================== 16 29 95.5 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCTAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //