Array 1 12-1166 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000106.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 12 32 100.0 34 ................................ ATCGTATGGGGCAGGTACATTAAATATTATAAAT 78 32 100.0 34 ................................ TAGTCTGTTCTGGTGCTTGCTAGTAGTCGAGCTA 144 32 100.0 34 ................................ TGCGAAGCGGTGCAAGGGGCATGATTTTAATTAA 210 32 100.0 35 ................................ TCTTTTCATCGTCCTTATCTCCCTTTTAATTAATC 277 32 100.0 34 ................................ AGTCCGAACTTGTTCTATCGTATACCCTTGTTCC 343 32 100.0 33 ................................ CTGAGACAGTCGCGTGGGTAACAGGCGCTAGTG 408 32 100.0 35 ................................ CTTCACGAGTTCAGAGAACACAGTCGTAAGCTTTT 475 32 100.0 33 ................................ TAACCTAAACAATAGGTATCCTTCATCTTCCGC 540 32 100.0 34 ................................ AATCCATAGACAGTGATTGGATGTAATGAGAGCT 606 32 100.0 34 ................................ GACTTTAAGGGCTTCTTACGAATTAAATCGAAAT 672 32 100.0 33 ................................ TAATGGTCAAATCGAGGGTGTAACTCTTGCGGA 737 32 100.0 34 ................................ ATCTCACAAAATAATGATGATCATTATGCTCGAA 803 32 100.0 34 ................................ ACCTAGTCAGCACAAATACTTACACAACAAACAA 869 32 100.0 34 ................................ CTTTAAGCTAGAGGATAAAGTTTGAATACCAACA 935 32 100.0 35 ................................ AATTGACGATAAGCATATATTATTCGTGTCTCTTC 1002 32 96.9 34 ..........G..................... ATTCATGACACTTTTAACATCTTCTTTAGTAGTT 1068 32 96.9 35 ..........G..................... TGGAGCTAGTTTCCCCCAGTTTTGAAAAGAGTTAT 1135 32 84.4 0 ...................T...AC.A....G | ========== ====== ====== ====== ================================ =================================== ================== 18 32 98.8 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : GTTTAGGATTAG # Right flank : GGTAAATCAAAGTTGGTTAAATCCTTTTTGGCAGGCCACTTGTTCCTATCACAAAAGTGGTGCGGAGGTTACATAATGGCTTTATTAGAAATGGGATTAAATCAGTTATCGGTATTGACTTTAATAATTGAAACAGCAAAGGAAGATTTCAACAATAATCATAATGTTTCTTTCAAAAAGAACGGCTAAGGATTCTCAAATTGAAGCTGTTTCTGACGATTTATTATTAGAACGGGTTCTTATTCATCACCTTGATGACTTAAATGCCTATTTTAGTGAGAGTTATCGAATTTTGCAAAGTAACGGACATTATTTAATACAAGAGCGCACCCTAGAGAATTGTCTCTTCCCAATCCGTTGACTTAGATTAATATACAAATGATGATATATAGAAAAAGCCACAAATGAAACAATGTGGCTTTTTTGTATATTTTACTCTACTCAAGATTAGCGTGTTTCCCATACATTTTGTTAGAATCTAAGCTTTTTTTCTTCATAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 883-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000002.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 882 32 100.0 37 ................................ CGTGAAGCGATGCGTATTGGTGAGAAAGACCGTCAAC 813 32 100.0 32 ................................ CCATGACTAGATCAATACCTATTTGCACAAGG 749 32 100.0 34 ................................ AGAGGTTAAAGGATTATTAAGACAAATCGCTGAT 683 32 100.0 35 ................................ AAAATGGGAGTATATCGGCAGAGGATTTTGTCGAT 616 32 100.0 33 ................................ TGGGTTATAGCTGCAATAGCCGCACTAGTAGCC 551 32 100.0 33 ................................ TAGATGGAAGATTTTATTATGCAAGTAGAAAGA 486 32 100.0 34 ................................ ACCGCTTACCCTTTCAAAATTAGCGAATTAGAGG 420 32 100.0 34 ................................ TGCTCCTCCCATTTTTTTATAATTGGCTCATAAT 354 32 100.0 34 ................................ CGGTGATAGTTAGAAAAATAAAAACCACAACTCC 288 32 100.0 35 ................................ AATCTTTGCGAGTGGATTACACAGAAGTACATGAA 221 32 100.0 32 ................................ ATGTTAATCAAAATGCACAAAAACACCTATTA 157 32 100.0 33 ................................ TAATCTAAATCATGTGCTAATTTATAATTAATA 92 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 100.0 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : AGGTGATAGTAGGCAATGTTAATTTTAATAACTTATGATGTGAGTACAATGACAAGTGCTGGACAAAAACGTTTGAGAAAAGTCGCAAAAACCTGTCAAAACTATGGTCAACGAGTTCAAAATTCGGTATTTGAATGTATCATTGATTCTACACAATATGTATCATTAAAGCATGAACTATCATCTATTATAAATCCTAAAGAAGATAGTCTCCGATTTTATAAATTAGGAGATAACCACAAAAATAAAGTAGAGCATATTGGAGTGAAGGAGTCAATTGACATCGAATCACCTTTGATTTTTTGACGAGTTTTAATGAGAGAATAGATGAGTGCGAATGTGAGGCGATCATCATTTCCTAGGGGGATTCGCACCTAAAAAATAAAGTAGATATTGTTGGAATTTGTCGTATTTTTAGGAATGAGTTAATTCTGAGCAGTTTTTTTGTGGAAATGTCTTCTAATTAATGGGTATTTTCTTTAATTTGAGCCATTTTCGCT # Right flank : TGGTAACAAATATGATGACTTTGCAGACGTTGAGGAAGTCGCACCTCATGTAGGTGCGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 753-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000173.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 752 31 96.9 34 -............................... AATTTGATGATTATTAGTATAATTATCACAAAAC 687 32 100.0 35 ................................ TGGTTCTATCAGTGCTTATGATGGTCCTTTTGCAC 620 32 100.0 33 ................................ GGTTGCTGTTAATCTACCACATTATGATAATGA 555 32 100.0 33 ................................ TGAAATTCTTTTCCACCTTTTCAACCATTTGCC 490 32 100.0 34 ................................ TTCGCTCCAAGTCACACCGTTATCAGCGCTATAA 424 32 100.0 35 ................................ TCTGATAACTCCCTAAACGTCAAACCACTCGTAAA 357 32 100.0 33 ................................ TTTGAATATTTATTTACAAAGTCAATGAATAAA 292 32 100.0 34 ................................ AGGTAATTCATTGATATATATTCAACCCGATGTA 226 32 100.0 34 ................................ CGTTAAATCTTGTGCAAACATTTCAATAGCTGAT 160 32 100.0 31 ................................ CACATTACATATCAAGGGAGGTCTGATTGTC 97 32 100.0 34 ................................ TGTATATCCTTCTTTCTACCTTTTGAGCGTCCTT 31 31 96.9 0 ...............................- | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.5 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : | # Right flank : A # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1210-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000161.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1209 32 100.0 34 ................................ AGATTGGTCTAAAGAATCATTGTCGGCAATGTTA 1143 32 100.0 34 ................................ AGTCACTAGATAACCAAGAAATAAAACGTATAAA 1077 32 100.0 34 ................................ ACGTATGACATAACTTGGTTGTATGGTTACATCG 1011 32 100.0 34 ................................ ATTTTTCCCCTCCTGTCTAGTAATCCGTTTCGTG 945 32 100.0 34 ................................ ATTCTCATTTTCATTCTCCCTCATTTCATTTTTT 879 32 100.0 36 ................................ TCCAAAGAAATAGGATGTGGATACAAAAGAGCTGAA 811 32 100.0 34 ................................ AGCTATTGCAAAGGTGGTAGAAAAGTATCCGCAT 745 32 100.0 33 ................................ CTTAAATCTCCACCGTTTTTCGATTCTTTCACC 680 32 100.0 30 ................................ TTAATTTTCGGGTGATTTTTTGAAAAATAG 618 32 100.0 34 ................................ TGATGCGGCTATAAATATGGGGCTTGGGTCATCT 552 32 100.0 33 ................................ ATCTATTGCTAGTGGTACTGATGGTCCCTTTGC 487 32 100.0 32 ................................ AAAAAATCATTCCAGTCCTTGAAAGGCTGCGT 423 32 100.0 34 ................................ GGAATTGCCATTTATGGAATCTTTTGGAAAGTTT 357 32 100.0 33 ................................ ATCTATTGCTAGTGGTACTGATGGTCCCTTTGC 292 32 100.0 33 ................................ AATATGAAAAAGATAAAAAAGAGACTTCGGGAA 227 32 100.0 33 ................................ GTTGACAATTGTTATATCTTTTATAGCATCTTC 162 32 100.0 35 ................................ CAGAAGAAGAATTTCCGTCAAATCTAATTGAGAAA 95 32 100.0 32 ................................ AGTCCTTTAATCCGCTCGATTTTAGCATAAGT 31 31 96.9 0 ...............................- | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.8 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATAGGTGACCCATATTTTTCAAGGTATTTGCATTT # Right flank : A # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10-693 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000175.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 31 ................................ GTTGTCAGTACCCAACTTATCGTTGTCTATC T [40] 74 32 100.0 32 ................................ CTGATAGGTAGTCGGAACACTACCTAGTACAC 138 32 100.0 34 ................................ TTGTAATTCCTACAATATCATGGTAACCCATATC 204 32 100.0 33 ................................ GTTTTCGTCAGGCTCATAACCTACAGGTCTTAA 269 32 100.0 32 ................................ CAATATTATTATTCGCCAATATGATTCGATTG 333 32 100.0 34 ................................ TTTTCTGTTGTTTCATTTGATGTTGTGTTTTGAT 399 32 100.0 34 ................................ TGTGCTTGTTTGGATGTGACCCGGACAACGAAAG 465 32 100.0 35 ................................ AATCAATACTCCTGTTTGATTTAAATATTCTATTA 532 32 100.0 33 ................................ TGATTAACATGGATAATCTCTTTTAACTCTGTT 597 32 100.0 33 ................................ CCACCCATGTTAGAAATGGAAGGAGGTATATTA 662 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 100.0 33 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : GAATTAGTAG # Right flank : TTTTACTATAACATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [11.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 81318-80687 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000003.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 81317 32 100.0 35 ................................ TACAAAACAATCAATCAAACGAGACAAGCAAGCAA 81250 32 100.0 34 ................................ TTAACGGTTTTATTCTTCTCGTTTTTTTCAATTT 81184 32 100.0 35 ................................ CCATATTTAAGGTCAATAACGTCAATCGTTTCGTC 81117 32 100.0 34 ................................ TCTAATGTTGAGTATGATTTCAGCCACATTTACG 81051 32 100.0 33 ................................ AATCACCGCGTCAGCCTTGCCTATCGCATCATA 80986 32 100.0 36 ................................ ACCGATACAAAATTTAATAACTAATGGTGACTTTAG 80918 32 100.0 34 ................................ ACAATCACCATTAGGAGTGCTAGTACTGAAAATA 80852 32 100.0 34 ................................ CATTAAAAAACCTCCTTATCGATTTAATATTAAC 80786 32 100.0 34 ................................ ATTTAAGAAGTCGTCTAGTCGTTTATTAGCTACA 80720 32 84.4 0 ........T...........T..CC......C | A,C [80692,80703] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 98.4 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : AGAAGTGAAATGGTCAAAACCAAGTTATGCACAAGGTGGACTTGTTTGTTACTTAGCACCTGCCAAAAACCATGTAAACCTTGGCCTTTACCAAGGTTCAAAACTTAATGACAAGGAAGGGGTACTTCAAGGAACGGGAAAAGATATGCGTCATATCCAGGTGAAAAAAGTAGAGGATATAAGAGCGGATTTGTATAATTCTCTCATTCAAGAAGCGATAGAACTGAATAAATAATGACAAGTTAATGGGCTTCAGGTACAGGGTCACTAATATTTTTATAATTATAGTCTGTTCTCTGTGTAACTTAAAGAGTCTTTTATTTTTGACAGCGGTGCGAACCTATAGCAAACATAAAATACCTAGTAGATTCGCACTGAAAAAAGACAGTATTATGTGAAAATATGTGCGTAATCGAGTGGGGAATTGCTGTATTGTAGTAATAAGAGAAAGTTTTTTATATATTTGAGTGGTTTTGAGCGTTATTTAGTCAAAAATCGTA # Right flank : TTCTGTCGCATTATATATAGGAGGTGAGTAACTTATGGAAAAAATCTTGGAACAAAATCGTGAAGAAAAAGAATGGACGCTTATCATCGTTACTTTAATTTCATTCCTGACCTTTAAAAAAGTGAACAAAGTAGAGCGAATGAAAGAGAAGTTAAAAGCTGAATTAAATAGGAAGTAAATTCGACAGGTGACAGTTGATCTTGTCGAAATTTCACGGCTCTGATTCGCTGGCTTTTGGCTTCATTGCGGCTCTATGATTCTCTTTGCCCCTCCCAATTCTCTCGCTTTGGCTTCAATGACTTCCAAAATCCACTCCTGCCCCTCTCCACCCGCAAAAAAAGAGGTAGTTCGACAAGTGCCCCTATCGAATTCTGAAAATGAATCGAATATTTATTCATTTCTCTTTACTCTCCTTCGTTTTGTGAGAAAATAAAGGGAGTTTGAAGATGGGAGATTCTTTTATGAACCGTAAAATAATCATTATATTTATATATTTATTA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5-371 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000089.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5 32 100.0 37 ................................ CTTGCGGACGAGATTAAAGAGTACCACGGTCAAAAGG 74 32 100.0 35 ................................ AAAAAGGCGATACGTTTACGTCTATTGCGGCGCAA 141 32 100.0 35 ................................ CAAATGAAATAATTAAAATAGATGGACTACGAGTT 208 32 100.0 35 ................................ AATATTATCCGGAAGGGTGTGCATCTCTTGATTTC 275 32 100.0 33 ................................ AAAAGTGTATTCTCCTCCTTTTTTGTTTTAACT 340 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 100.0 35 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : TGTAG # Right flank : TCATTACATCAACCTCCAATTAACAATAATTATAGTCGCACTCTATAATGAGGAAACTCATCCTGAATATGACGATATGTTGTTATGGGCTGAGAAAGATACAGGTGGTCGGAAGTTTGATCCAGATTATTTTTATAAAAATGAAATAAATCGGAAGCTGAAAAGAATCAAGTGTTAGTGACATACAATGAAAGTAATTCCCTATAATGGAAGTACCTGCCCTGATTACTGTGGAGTTTATTATTTAGAGTTTAACTTAATCGTTCCCCCCAAGCACATGTCGAATCCTGCATGTGCTTTTTTGTCTTGTTTTGAATCTTGTTCGAGAGAAAATGTAACGAGAGTGTGGATGGGATCTGACTATGGGCGATAAAATTAGCGAAAGTAACTAAAAAGATTTCGTTTTTATTGTGAATAAACAACAATTACTCATGCTTTTCTGAATGCTAAGATTAAATTAACTTAAAAACACGAAATATTCAGAAAAGGGGTTTGTCGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 13598-14029 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000089.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13598 32 100.0 36 ................................ ATTCCGAAAGATGATCCGAAAAGAAACGATAAAGGC 13666 32 100.0 34 ................................ AGCCGCTAGGTGGGCCGACTCGACCGCCAGTAAC 13732 32 100.0 35 ................................ ATATGCTGCATACTCTAACCTTTTTAATGCCTCAA 13799 32 100.0 35 ................................ AAGTTGATTACCAAAAATTACGATAAGTCTATAGA 13866 32 100.0 35 ................................ AGTGGGGAACTGAACTAGTGCGTAAATTTGGAGAA 13933 32 100.0 33 ................................ GCCCTTTATAGGATCGATATGTTCTTGGACTGC 13998 32 90.6 0 ........T........C.T............ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.7 35 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : CTTGCTTTGGTATTTTAGGAATTAAATTACGTTTGAAGTATTCTATTTACAATGATTATCCAGAACATGTAAGGTTACTCAAGTTTTAATGTTAGAAATGATAGGTAAATAGCTGGAGCTTATAATAAAGGGAAAGAGGAGGGTGAGATATCAAGTGGGAGGAAGGTAAGACTTATTTTCTGACCCATTTGTGCTGTGCTCTGTTAAAAAATATGAAAATTATTGATGAGTTAAGCTAGGTGGCATTTTGCTGCATTATTTTGTATCCGTAAAAGCTGGTCGGTGCGAACCGGAAGCTCTCATAAAATCCCTGGGAGATTCGCACTGTATAAGTAGTTTAACAAAAACGCTTGTATGAAGTAGTTTAATAGTTAAACATAGATAGAAATTAACTTTTTTAAAGGTCTTTTTTAGAATGATTAACGTTTAACTGCAGAGGTTCGCACTTAAAGGTGCTTGAAGTGTTGATGTATATAGCTTCAAGCTTCAAAACCTCCGCT # Right flank : TGTTTCATCATTATCAGGATCTTGTGATTGACCTGCCTCACTCTACGAAAGCCTTTAATATCGATTAAAGGCTTTTCGGAATTGTTAACGGAGCCTGTATTAACAAAGGCGTAGAAGAAAGAATCTTTAGCTATTATTAAAAAGAAAAATGACCATCTCACTGTGATGGTCGATTCATTCTGACTTTTTAACGACTTAATTAGTTCCTCAATGTTTAGGCACAAAAAAGACACCCTAATTTAGAGTGTCTCGTCAAATTTTTGCATTTTAAAGGTATCACTGTTCTTTATTTGAATGCATATCTTCATTAAATAATAACTTTACATAATCTCTTCTTGAATATAAAATTCGATAAATGGATACATGAACATCATCATATTTATAAAAAACAATGTAGTTTCCACTGATTAGATATCGATAATCTGTTTCAATATGAATCTTTGATGATAACTTTACACCTAACATTGGATAATTTTTAGTTTTTTGTAACTCTCCATGAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13340-13702 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPT02000099.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 13340 32 100.0 34 ................................ CTTTTAGCTTGCCTTGGGACACTTATACTGTTTT 13406 32 100.0 33 ................................ ACTGCCCCACCGGGTAAAGTTTTATTAAGCGGA 13471 32 100.0 35 ................................ GTAGAAAGCCGTTGAAATCAGACATACGCTACCAC 13538 32 100.0 34 ................................ GTTTCGGTGATAGCTTCGTCCACGATTTTATCGG 13604 32 100.0 35 ................................ GTTACTTCGACGCCCCTGTCGCCACTTCTAAGCGT 13671 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : TGCCAAAAAGAGTGAGGTAAGCGAGGAGAAGTTGTGATAAAACCATAATTTCTTCTACTACTAAGTGTTTCTGTCCTATTTACTCCAGTTTCAATGTTAGAGATGATATGTAAACAACTGTAGCTTATAATAAAAGAAAAGAGCGGGATGAGATATGAAGTGGCAGGAAATTAGAGACTTATTTCTGAACCGTTTGTGCCGTGCTCTTAAAAAAATTATGAAAACTATCGATGAGTAATGGAAAAAAAGAATCTTGTTGCATAATCATGTATCCTTAAAAAACTGGTCGGTGCGAACCGGAAGCTCTCATAAAATCCCTGGGAGATTCGCACTGTTTAAGTATTTTAACAAAAACGCTTGTATGACGCAGTTTAATAGTTAAATATAGATAGAAATTAACTATTTTGAGTGTCTTTTTTAGAATGATTAACGTTTAACTGCAGAGGTTCGCACTTAAAGGTGCTTGAAGTGTTGATGTATCTAGCTTCAAAACTTCCGCT # Right flank : AGTCAATACATGTCCAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //