Array 1 341325-340299 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIB01000002.1 Streptococcus macedonicus strain UMB0733 .21837_8_71.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 341324 36 100.0 30 .................................... TCAGCTTGAAATCTGGCTACGTCAAGGCTA 341258 36 100.0 30 .................................... AGTTTCACAGATTCAACAATAACAACGATA 341192 36 100.0 30 .................................... ATGAGACTGTTCAAGTATCTGGGTCAACAC 341126 36 100.0 30 .................................... AGTACGTCAAATAAATCCCTATCCATATCA 341060 36 100.0 30 .................................... TTATAAGTTGGTCTCCAAGAAGTATCATTT 340994 36 100.0 30 .................................... AAATGTAGTTGAATGATTTCCCGTCCCCAC 340928 36 100.0 30 .................................... GGAACAGTCTTAGAAACGGTTGACATGGTT 340862 36 100.0 30 .................................... GCTATCAGACTTACGTCTTCTTGGACAACA 340796 36 100.0 30 .................................... ACGTATGACGGTGAGTTAGCAAAAGTCGTT 340730 36 100.0 30 .................................... TGATACAATTAAAGCTTATTTTAAAGAAAA 340664 36 100.0 30 .................................... TGCTACACGAATTCTGTCACCATCTACATA 340598 36 100.0 30 .................................... AATGTTTTTTGCGGTAGTTGTTGCTGTGTT 340532 36 100.0 30 .................................... CGAATATTTGAAGCAAGACCTTACAGATAA 340466 36 100.0 30 .................................... TCACGACATGGGGCTCGGGAAAACGTACAC 340400 36 100.0 30 .................................... ACTTGGAATAGTGCTAGACCAGCCACTTGT 340334 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTTGAACGCGAAATCGCCCTCTGGTTTGGAGAATAAATAAAAGGAATTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TCATTCCTCCTAATTAGAGGTAGACCGTGTAGTTTTATAGCTGTGCTGTTTATTTTACCATCTTATGATGCTTTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACACATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 342993-341966 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIB01000002.1 Streptococcus macedonicus strain UMB0733 .21837_8_71.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 342992 36 100.0 30 .................................... GCATTAAGTATGAACAACAAAACATGATCA 342926 36 100.0 30 .................................... CAAAAGAAACGACGTACACCCAGCTTGAAT 342860 36 100.0 30 .................................... GAATGAAATTAATGTCTATTCAAAACACTA 342794 36 100.0 30 .................................... GATTATTGATGTGTTAATGACGTATACGCA 342728 36 100.0 30 .................................... GATTTTTTATAGACATCATCATTTACCCAA 342662 36 100.0 30 .................................... TGCATCACGAATAGCATCAGCACTGATTGA 342596 36 100.0 30 .................................... TGTTTCTGATTCAATAAGCATTGCAACGTG 342530 36 100.0 30 .................................... TGGGCAATATCTACGAAAATCCAGAGCTTT 342464 36 100.0 31 .................................... GAATGTTCCAACGAGCATGACACCAAGCCTG 342397 36 100.0 30 .................................... CCCATACAGTTTGATGATTGATTCTAGTGC 342331 36 100.0 30 .................................... CCGTTTGATGTGTTAGAAAGTTTCATTGAG 342265 36 100.0 30 .................................... TGAAAAATACTTTTATGAACCTAAGGACTT 342199 36 100.0 30 .................................... TTGAGAAAAAACATGGTATGCACGGAACAA 342133 36 100.0 30 .................................... GACGGAATAAGTGAACCAACTTACTATGTT 342067 36 100.0 30 .................................... ACCACCATCGTCGCTTGTAGTTGTCGAACT 342001 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATATAGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATTTAGATGAAGGGTTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTGAAGTTGGTTTTATTACTTTAATTCAAGCAGCCCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTCGCTGATCGAGAATATGTTAATTATTCAGAATGTTTGGCACAAGTTTTAGAGAAAAAATTAAAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTTAGGTATAATATAGTTAAAAATAATGAACTATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTTGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTGAGCAGAAATAGTATTCTCAGAAACGTACTAAATTTTAGTGAAAACGCCTTTCAACATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //