Array 1 2552-2848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFQ010000010.1 Paenibacillus polymyxa strain LMG 27872 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2552 32 100.0 37 ................................ GGCGTAGCAGTATCCCCGTTAAACCCAATATCCTGCA 2621 32 100.0 34 ................................ TTGTAATATTTGATAAGGTGCTGAATGACCTCAT 2687 32 100.0 33 ................................ TGACATTGTAGCATAGTTCTCGCTGCTTTGTAA 2752 32 100.0 33 ................................ GGATTGCTCGACACTAAAGACGTAGCCGTAAAA 2817 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 100.0 34 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Left flank : TATGTATGGAGTGAATCCTGTGGAGGCCTTGTCTGTTTATTTTCTGGAGTCTGTGGATATTCATACCCATTGGGAATGGTGTGATGCGGGCGGTACAAGCCAAAAGGCTATTCAATATAAACGGGAGGCCCCTTTTATGACGTTGGTTCAGGCTATTGAGAGAGCTGAGTTGGAAACATAAATTGCTATCGCATTCTATTTTTGCCCGCAAAATGGACTTCCACGGAATGTGTCTCCTTTACGCCCAATTGAAACCAAAAGCTGAAAAGGATATAGAGAAATACGGTATGGGTTGCGTTGAATATAGGTAGCAAAATATAATAAATAAAGCTGGTGCGAACCCCAAGCTCACATAAAAATCCCGGTTCCTTCGCACCTCAAGCGGGACGCGGGATTTCAGAGATTCACGCCCATTTGTTTCCATATACGCGAGTCCAAAAAGGACATTCGCACTTTACGTACTGAGAAGCCTTACACAGCAAGGCATCTCAGTACGTGCG # Right flank : TTTTATTGTTGTTATTGAGGCTAATACGGAGGATAGTCGCTCCTTAAGCAGGAGCGTGTCTGCAGACCCACAATTCAGAAAAGCTCCCTTAGAGTGAGGGAGCTTTTTTGTCGTGATGTGATATAAAGTGCGGTTAGCTAGGAGAGTTGCAGGGGGCGTATGACCGAGGCTAAGCTTGGTCTGTTAACGTTATAGGGAGAGCTGGCAATTGCTCAGCCTGTGATGTAATTTATTGCAGAGATACGTGACAATGAATTATTCTATTAGCCATCTGTAAAATTGAAGTGAAGTAGGTTATGTGAATGGAAAGAAATGATACACAAAAAACACTGGCGACCTGGTTTAATTTTAAATTCCGTCTCTTGATAGGCGGCATAGTGGTTGGCTTGTTATCTGGTAGCGTGGTTGTGTTGTTCCGATTTGTGTTGGAAGAGTCTTTGGAGCGTGTTCTTGAATTTTACCACTATCAATTGCGCCATATGTGGATTGTCCCATTATGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 158869-158160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFQ010000003.1 Paenibacillus polymyxa strain LMG 27872 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 158868 32 100.0 35 ................................ GAGCCTTTGAGGTAACCTATGGTTCGAATGGTTGG 158801 32 100.0 37 ................................ GCACAGAATCGGCTTATTCACTGGTGCAGCATCAAGC 158732 32 100.0 34 ................................ CCGTATAAACTCGAATTCTAAATAATCTCCTCTA 158666 32 100.0 37 ................................ CGAAGATGACGAAACGGTTCGAAAGACCATTAACCGC 158597 32 100.0 36 ................................ ATTGAGTTTGATTGCTGATTACTTAAATACAACAGT 158529 32 100.0 33 ................................ TACTCAGGTATTGCATTCGTTGCCTACGCTACA 158464 32 100.0 38 ................................ AAATAGTCCGGTTGTACGAAAATAAACAAAGCAATGGA 158394 32 100.0 35 ................................ CACCAGTAACGGACTATTTTGATCTGACTATTAAC 158327 32 100.0 36 ................................ CTCCATGGTACAGCCGAGTTTTTGGGCTGCTCGGGC 158259 32 100.0 34 ................................ TTATCTTTTACAGGCGGCTTTTCCGCCTGTTTAA 158193 32 93.8 0 .............................CG. | AA [158163] ========== ====== ====== ====== ================================ ====================================== ================== 11 32 99.4 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGCAGCCGGTATGATGAACAGGGTTAATAACTCAACTTTTGCTGAACGTTTTCATAAAATATTTTACAAATACCTTTATGATTTTCGAAAACATAAAGGTATTTTTCTGATCAATGTAGTGGATATTTTCGGATGTATTTACCCAAAGCCCGAACGTTCAGCTTTGGAGTTAACTGGTGGAACCCTGCTTTTAAATGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTCCTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGTATTTGTTGCTAAGCCAAAAAGCGAGTCTGTTCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGATTCGCACCTCAGATTTTGTCGAATTATATCGAATGTGAACAAGTTTTAAACGATCGCAAGAGGATGAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGTTATTTAAATAGGGGGCATTTGACCCATTTTCGCT # Right flank : AGTAGCCTCGTCACCTGGTCACATAAAGTGGTGACCGGATCATGAAGCAAATCCGAGAAGTGGAGGAACTGGACATATTAGCGGTTTGGAGGGGACGACGGTGGTTCAGTACAATTCCGTGTGGGATGATCTGATCTTGCAGCAAAAAGATGATTTTTACTTCCATGGACGCCATAAACGCCCGCCGTTAGATAACGTGAATACCCTATTATCTTTTGTCTATACACTGCTGTCCAACGATATGAAATCCGCACTGGAAGCTGTCGGTCTCGATGCTTATGTAGGTTTTCTGCTTAGAGATCGTCCAGGGCGAGCCTCCTTGGCATTGGATGTGATGGAATTAGAGTATGAATTACTACATTTTCGCTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTTATAGGTAGTAGGGGGTGTATCCCCCTTAAAGCTCGCACTCCATGTGAGTGCGTGGGTGGTATGAAAAAGAAGGCTTGTTTCGTGGCCTACCCAGCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 166445-166209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFQ010000003.1 Paenibacillus polymyxa strain LMG 27872 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 166444 32 100.0 34 ................................ CACTTTAAACCAGTGATAAGGACCCGCAGGGTTA 166378 32 100.0 37 ................................ TTATTTCAAGTTGAAGTGTGATGTAATTAGGAAATTG 166309 32 100.0 33 ................................ ATGCCTAACTGGTGGTCTATAAGTATTGTTTCA 166244 32 96.9 0 .........T...................... | GTGA [166222] ========== ====== ====== ====== ================================ ===================================== ================== 4 32 99.2 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACATTTGCTCATTTTGATCACGTATGATGTAAGCACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTCCGCAGCTTAAAGTATGAACTTGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAAAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTATGATATGGAAAGCCCACTCATTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAATCCCGGGTCCTTCGCACCTCGAATTTGTCGAAAATCAATTGAATCAGTTGCCATCAGTAAAAGTCAATGGTTGATTAAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTAGAATTGATATCATTAGGGTATCAATTACTGCATTTTCGCT # Right flank : TTCACAAGTACAGCTCCCATCGAAATGAATAGAAGACACGTTGCGGAATTGAACTGCGCAAGGGTTCTGACCAGGCTGTTATTGTTTCCGCTGGTTAACTGGTTCCTTGCCGCCTGAACGTGCCGTAAAGCCCCGGAATAACTCGGGAAGTGACTCTGGATATTGCTGAATTACAGGAGCTCTGCTGCGATCTGTTTGAGCACTGGCGGTGTTGGGATGAGTTGGCCGTCACCTTTGTTGCCCTTGATGTAGGTTTTATCCTCGTAGGCATAATATACATCGCCTTGGCCCTCAACGACCGGGTAGCCGCTCTCATCATCAGTTAAAGATGTTTGCACGTGATTGCCATGTTGTGCGGCATGCTCCTCATTTGATTTTCCGTGATACAAATTTACCACATGAAAAGTCCAGGGACGGGCCACTTAGAGGCCACTTTAAGGACAAATATAGGACACGAAAAAAATTTTCTGTGAAAAGTGTTTTTTCTCCGCAACTTTTTC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 175997-175565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFQ010000003.1 Paenibacillus polymyxa strain LMG 27872 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 175996 32 100.0 37 ................................ AGCGAAGACCAGGTTAGGGCGCTGCTGCTGTTGGAGG 175927 32 100.0 34 ................................ GTTAACGGGTTCCCATTGCCGCGGACAGAGCGCG 175861 32 100.0 36 ................................ TATATATGCTGATGCAGAAGGGCTCCATGTAGGAAA 175793 32 100.0 34 ................................ ATCTAAATTAACTGCCAACCATTCATCGGATTTA 175727 32 100.0 34 ................................ ATATCCTCAAGCTCTCTCCATGTATCGGCGTTAA 175661 32 100.0 34 ................................ CACAAATGTCCAACAGTGCCGCAGGCGGTCATTG 175595 31 75.0 0 ....T....T..AC....AT....-.....G. | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 96.4 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ATGTAGGTTTTCTGCATAGAGATCGTCTAGGACGAGCCTCATTAGCACTGGATGCGATGGAAGAGCTTCGAGGAGTATATGTCGACCGTTTCGTTTTGTCCTTACATTGATTAACAAAAAATTGATTAATGGCAAAGGATTTAAAAAAAGAAAACGGGGCCGTCATGATGGACGATGATACGAGGAAAATCGTATTGAAGGCATGGCAGGAACGGAAACAGGAAAAAATTATTTATTCTTATTTGAATGAGAAAATGTCTTGGGGGCTGGTGTCCTATTCCCAGAAGTATACGATATGGAAAGCCCACTGATTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAAACCAGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTAATTGAATGAGTTACCTTCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGCGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCG # Right flank : ATCTATAGTGTTCGTAACCTTGCATAATAACTCCCAGGAGGCTTTACATGTTTGGAGTCAATATATAATTTGTTTTATGAACTTTAAGATTATTAGTTTAGTTCTCTCTAAAATACTATTTCCACATGACTATAAATAATATTTGTTTACATAACGAGAATAGATCTAATATGATTAGTAAGTGGAAGAGAGTCTAGTATTTTTAAGCGAAATACAAGTCTCTTCACAATAAACACCCAAAAGTCATAAAATGAATATTGCGCTATGGGTGTGAAACCGAAATCCTTAAATTAAGTAGATAAGAGAGGAAAGGAAGAGAAATTACAACGCTAGGACAATTATATTATCATTATCTATGGATTCACTTAACAACGAGGAATGTCCAAGTGGGGATTGTAGATGCTATCGATATTGTACCTTATGACACGATTACACATTTTAAGTATTTGCTCAAAGGGGGAAAATAGTTGAATTTATTATCTATTCCTGGTCTATATTTT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 177274-176764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFQ010000003.1 Paenibacillus polymyxa strain LMG 27872 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 177273 32 100.0 36 ................................ AGATGAAACTTTAATCCAATTAGATCATCTCAGTAT 177205 32 100.0 34 ................................ ATCCTTGAGGTCAAGGGCATCTTTTTGAGCAATA 177139 32 100.0 36 ................................ ATTTCAGTTGCAATAATGTGAATAGTGCGTGCCGAT 177071 32 100.0 36 ................................ CATGTTTTTAATTTTTATTACAATAAGATCATATTA 177003 32 100.0 40 ................................ AAGCCACGCCTGCCAGTAATCAGCGGTGATGTGGCCTGAA 176931 32 100.0 36 ................................ CTCTTTCGCCAGAGTGAAAATAAGCTCCAATGATTC 176863 32 100.0 34 ................................ ATATTGGGAGTTGCCATTAGTGCCTATGCCACTA 176797 32 87.5 0 ..................A..........CGG | AC [176767] ========== ====== ====== ====== ================================ ======================================== ================== 8 32 98.4 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : AGTTCCGTATTCGTGTGAATGTCATCTATCCAGGTGCCATTTCGACAAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGACAACCGTTGGCTGATGGACCGGGTCAACCCGAGCAGGTAGCTGATTTGGTAACATTTTTGGCCTCAGATCATTCGCGTCACATTACTGGCGCACAAATTGTCATTGACGGGGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATTCTCTGGGACAGAGAAATGTTTTGTGGTATCCTGAGTGTATTGTCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAAAACTGGATCCTTCGCACCTCGAAATTTGTCGAAATGGTTTTAAATTAGCTTTCTTCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTTGGCATCGTTTTTTTCGGAAATGCATGGAATTGATATCATTAGGGTATTAATTCCTTCATTTTCGCT # Right flank : AGCAGTCGCCACTTGGTCGTATAAGTGGAGAGCGCCTCTTTATCCGAAAACATGAAGAGGTCCGTGAAGTAGAGGAACTGTAGATTTTACGTGGCTTGGAAGGGACGGTGGCAGTTCAGTACAATTCCGTTCTCGATGAGCTGATCTTGCAGCATGGACGCCATAAACGCCCTCCGTTAGATAATGTGAGTGCCCTATTATCTTTTGCCTATAGACTGCTGTCCAACGATATGAAATCGGCACTGGAAGCTGTGGGCTTGGATGCTTATGTAGGTTTTCTGCATAGAGATCGTCTAGGACGAGCCTCATTAGCACTGGATGCGATGGAAGAGCTTCGAGGAGTATATGTCGACCGTTTCGTTTTGTCCTTACATTGATTAACAAAAAATTGATTAATGGCAAAGGATTTAAAAAAAGAAAACGGGGCCGTCATGATGGACGATGATACGAGGAAAATCGTATTGAAGGCATGGCAGGAACGGAAACAGGAAAAAATTATT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //