Array 1 817856-818494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068134.1 Corynebacterium ulcerans strain FDAARGOS_1118 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 817856 36 100.0 37 .................................... TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG 817929 36 100.0 39 .................................... GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT 818004 36 100.0 35 .................................... AGCCCACAGAACACTTACTGATTTAGTGGGGGAAA 818075 36 100.0 58 .................................... CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAG 818169 36 100.0 38 .................................... AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA 818243 36 100.0 36 .................................... GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG 818315 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 818386 36 100.0 37 .................................... TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG 818459 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================== ================== 9 36 100.0 40 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAATGCTGAGGAAGATTCCGTTTTATATTGCGATCTTGGACTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATAGAGCAACAACGATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGCTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TGACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGAGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGCTGGTACTGAGTGATAAGCGAGCGTCAGGTAGTTGGAACTGCCTGGCGCTCATTCATTTTTCAAATGTCACCACACACCCCTACGGAGCATGTACGCACTTCGGATACACGACTCGCATTTGCGTTGTTCAACGCCACAGAACGATATCCAGTCCATCGTCTAGAGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAACATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGTCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 899545-898601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068134.1 Corynebacterium ulcerans strain FDAARGOS_1118 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 899544 29 100.0 32 ............................. ATGGGGCCGGTTCCCTCCACCGTGACTGATTC 899483 29 100.0 32 ............................. CGTGGAATCCCACAACCGCTGAAGGTGCAGGT 899422 29 100.0 32 ............................. TGCTGAGTCAAAGCTTCAAACGTCACAACACC 899361 29 100.0 32 ............................. CGTGTCTGGCGCACCGATGGTGACGATGAGGC 899300 29 100.0 32 ............................. ATCTAGAAACACTGATTGACCAGCTAATTACC 899239 29 100.0 32 ............................. TCGGGGCTGAAGGTCCCCACGCGGGGGCCGAG 899178 29 100.0 32 ............................. TGGTGGACGGGGGCTACTGGCCAGACGATGAT 899117 29 100.0 32 ............................. CTCATCGGTATATCCCCACTCGTATTCGTCGA 899056 29 100.0 32 ............................. GATCATCACCAACATGACCGACAGCGGCGACT 898995 29 100.0 32 ............................. AAGCTCATAAACGGTACGATCAGCGTATTCAC 898934 29 100.0 32 ............................. CGGCCATAGCCTCGCGCCATTCCTCCACCGGT 898873 29 100.0 32 ............................. ACTTTGCGCAGGATCAGCTGGACGGCAGTGCC 898812 29 100.0 32 ............................. AATATCTTTGTGATTCGCCGGCGACAACGGCA 898751 29 100.0 32 ............................. ACGTGTGGGGCGAAAAGAATCATCAGCTGGTG 898690 29 100.0 32 ............................. GAGCAATTCCGCGCGGGCCTTAGCCCCTGAGC 898629 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : AGTATTGTGTTATTAAAATGCTTGTCAGGGACATTTGCCCACGGTAAATCATCTTTAATGTACTCTTGTTCAGAGGCCTGATGCCCTCCCCTCTTAGCGAGAGTAAAGATGTATTGACGAGTAACCCCATATTCCCTAGCAATCTGGGATTGGGTCATACCTTTACCCATTAGATGCATAACTTCTTCAGGTGTAATAACCATTATTCGTCTCCATTGTTGACATGTGAACAATAACTACCTTTTATTTATGTAGATGGTGATGGTGAATACAAATAAGGTGTTTGCGATAGACGTTACATATAAAAAATATATTTCTTAACTATGGTGAATTTCCTGCTCAATATCTATAAATTTGTCAGTGGCTAATATTTGTAAGGTCAGTTTTTTTGGGGGGTATTGATGACCATTCTGGTAACTCAGGAATGGTAAGCAGATTGTTAGAGATGGACTGTCTTTGTGCATGGTTTGAAAACTAAAAGTAATTGAGATAATAAAATT # Right flank : ACTAAATAACCTGCGCGTTTACTCACTCTCCGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAAGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAAAATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGTTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGCCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1483366-1482298 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068134.1 Corynebacterium ulcerans strain FDAARGOS_1118 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1483365 29 100.0 32 ............................. ACGTTGGAATCAACCCAGGCCCAGCCTTCTTG 1483304 29 100.0 33 ............................. TGTGCGGCGTTCTCACCCAGCTGATTCCACGCG 1483242 29 100.0 32 ............................. CGCCAGGCCCGCACTGTGGAAGTTGTGTTGCC 1483181 29 100.0 32 ............................. CAAAGTTTCAATGAGTTCCCCATCAACATCGC 1483120 29 100.0 32 ............................. TTCATCAAGATCATTACCGTTAGTGTCGATCA 1483059 29 100.0 32 ............................. GTCACAGTTTTTTGGTGCAGGTGCTGTGGCCA 1482998 29 100.0 32 ............................. GCCATCGTTAAAGGGATAGCCATGGGCGTAAT 1482937 29 100.0 32 ............................. ACTCAGGATCGTTCCCATCAGGGAATCTGCGA 1482876 29 100.0 32 ............................. ACTCGAAACGCTGCGCGGGTGTCATATCAGCA 1482815 29 100.0 32 ............................. TGCTCGACGACTCAACACCAGGACCGTGGGTT 1482754 29 100.0 32 ............................. TTCCCACCGTGGTGAGTAGGTGGGAAGTAAGT 1482693 29 100.0 32 ............................. TTTGTTCCAGAGGCTCAAGATGTAGTCGATTT 1482632 29 100.0 32 ............................. TGGGAGAAAGTGCTCACCGATGGATTCACCGA 1482571 29 100.0 32 ............................. CAGCCCACAGGGACGGGCTGTAGTGCGGTCCC 1482510 29 100.0 33 ............................. AGCGCAAATTGGATCGTGTGCGTGAGGATATAG 1482448 29 100.0 32 ............................. TTACTTTCGTCGCAACGCCCCACCGTTGCAGT 1482387 29 96.6 32 ............................A TCGGATCATTGGAACCAGCTTTCGCACCCGGG 1482326 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTTTTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGCTTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGAGTAAACGCGCAGGTAAGTTAGT # Right flank : GTCGTGCGGGTGCTTGTTGAGCACAGCATCGGCCCCACCTGGGTGGGCGTGAACCCAGTAAGCGGGAAAGACCAGTTTATCTGGCTTATTGACCCTGTTTACGCGGATGCTTCGGGTAAATCTTCGCAGATGAAGCTCCTCGCCGCGACTACACGCACCCTAGGTGAACTACTCGACAATGATCCCCACTTCGCCCACGGTTTTAGCCGCAATCCGTTCTACACGGGTAAGTCTCCGTCGGCTTATCGTTGGTATAGGCAGCATAATCGTGTGATGCGTCTAGGTGACTTGATAAGGCAGGTGAGGGACTTGGCCGGGACAGACCAGTACAAGACTGCACCACGCCAGCAGTTTAAGTCTGGGCGAGAACTCATTAACGCGGTGAAAACCCGTCGCGAAGAGGCACAGGCGTTTAAAGTTCTGGCCCAAGACGTGGACGCGGAAGTCTCCGCTGGACTCGACCAGTACGACCCGGAGCTCATCGACGGCGTGCGCGTGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //