Array 1 61329-61998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONI01000011.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164 BS13DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 61329 30 100.0 38 .............................. GAGTGTTTGAACGGCGTTTTCGACACGCACAACTGGCA 61397 30 100.0 44 .............................. CAGATTTGCAGAGTCGAACACATAGTCTTTTGAAATAATCGAAG 61471 30 100.0 46 .............................. ATCTCGGTGTTGAAAAACATAGCTATCAGCCAGCTGAAATATTCCT 61547 30 100.0 34 .............................. TCTATCGGGTCAATGAAATACGCCAATGGTACCA 61611 30 100.0 38 .............................. AAACGGGTGAGCGTTTCGCTCACCCGTCCATACTCCAT 61679 30 100.0 44 .............................. AAAGCTCGTCTATCTTATCCCACTTCGATTCTCTTCCAGCCACA 61753 30 100.0 42 .............................. GTTCAGTTTCAACGTCGAGCAAGTGCCAGCCGAAAAAGCGGC 61825 30 100.0 42 .............................. ACCTTCTGTGCCTCCTTTGTCTAATACGCATACAATGTTACG 61897 30 100.0 42 .............................. TTATTTTCTGCGGGTCTGTTGTATGAGCCATTGCCGTTGCCG 61969 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 10 30 100.0 41 GTTTAGAGAGGTCCTATGAGGGATGGAAAC # Left flank : GAGGAGATACACGAGAAAATCGTTCTATTCGAGATGATAGTCTTGTCAATCACCAAAGCGGACAAGATCACTCAAAAGATTTTCGATAGGACAAGGCTGGGGAACTTAGCACCCGTGCCAGTCAAAAAGCTCTTCTGTCTTGATACATGGATTCAGTCCCCGAAAAGAGGGATAAAATACATTTGAGAAGAGTGCAGAGAAATAGCAGGGATGTCAAAATGTTGTGACGTCTTAATGATCGTTATTACCTTTATTTTAACTTGATCTTTGACAACTAAATCTGTGATTTACCAAATTCTGAACAGTTCTTTTAGAGCCTGCTTTAGAATATGTGATTGTAACTTTCGTGTGAACTCATCCTTTTCCTGTCTCACAGAGGGGGGATCCCCAAAACATGCCTTTTCGAAAGTTCTCATTACAAGGGTCCTTCTCGAAACGTCCAATGTAACATCGTCCTTTGCAACAAACTGCTTTGTCAGTAATAGAGCCACTTCTACGGG # Right flank : CGAGCACACAGAAAGTTTCCTTCCGAAGATTCGGAAAAAGTTCAGAGAAGTCCTATGGGGACCCAACTGCATCGGTCCGAATGGAGATCTTTCCTGAAATGGATGGGACGTGGAAGGTGCCTCCGAGTTCAAACCGCGAATCTCTTCGACCTGAATGAAGTTTTTCTCGAGAGAATGAAAACTGATGATAGGGGCGGAAGTTGTCCAAATCGGATCCTTCCCTGAGGGATCGAGACCCGCCGGTCGGATCGAAGATCGTCGTCTCGCGGACAGAGGCTTTGAACGTTCTGTTTTCTGTGATGAGACTTCGATGCGAGAATTTGCAAAGAAGTGTTATAATTCTATTGAAGTACTGGGATGTGGGGGGACGTGATGGATAACTACCATCATTCTTTTTTTCTCGCGACTGATCCGTACGAGTACCTTCGATTCGTAAGAAGGAGGGTTTTGTCAAGAGAAAAGCTTTTGAAGGACTTCGAGCTCCTTCCCAAGGACCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAGAGGTCCTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 76390-76782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONI01000011.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164 BS13DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 76390 31 96.8 44 ..............................G CAACATGCAATTTAGATCGTAGTTCTTTTTTCTTGCAAGTTCTT 76465 31 100.0 45 ............................... ACATGCTATTCGCCTCCTTTCACCAACACACTCTGTCAAATTCCC 76541 31 100.0 39 ............................... TCCAATCCTGAATCTCTCGTACTCTCATCATACCTCCGC 76611 31 100.0 36 ............................... TCAGTATGAACTATGTTTTCAACCGTGCATTTAAAA 76678 31 100.0 43 ............................... AGTTCATGCCGAGTTTGGCGAACAACATGGCGATTTCAAACGC 76752 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== ============================================= ================== 6 31 98.9 42 GTTTAGAAGGCTCCTATGAGGGATGGAAACA # Left flank : ATTTTCGATCAGAAAAGGTTGAAAGCACTGTCATTGGCACTCCAATCGAGAAATTCTTCTCTGTTGATACACGGATTCGATTTTCCGAACGAAAAACAGGTGGAATACATCAAAGAATGCGCCAGAAAACTCCTTAAAGATCTCGAGATCAGGGCAGAACTTCGCTTGGATCCAAGCATCGACATGTGCTTCGAGAAAGCAGGGCTCGACCTTTTTAAATGGTGATTGCTATTTCTTGATCACTGTTACTAAAACTTTTCAGTGGTCTTTGACAATTAAATCTGATGTTTACCCATTTCCAAAAGCTTCATCTGAAGCCTATTCTAAAAACAGGTATTGTAACGTTCATATGAACCACCCACTTGTGCCTCAAAAAATGAGAGACTCAGTAGAAGTGCCATTTTCGAAAAGCTTCAACAGAAGGGCACTTCCAAAAAGGTCGAATGTAACATCGTCTCGACTCAAAAAGTGCCGTCTTAATAATAAAGCCACTTCCACGG # Right flank : CATGGCACAAAACAACGTCATAATAGGACTCGGGAGTTTAGAAGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAAGGCTCCTATGAGGGATGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //