Array 1 58882-61395 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKFU01000030.1 Clostridium sp. MSTE9 ctg120006483017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 58882 33 100.0 33 ................................. TATCAGCCTACCATTACCGAAACTCATAGACAA 58948 33 100.0 35 ................................. CCGTATATGCCGATTGTCGAGCGAAAGGCTATGCA 59016 33 100.0 35 ................................. ATTTAAGTTTGTCCTTGGCAGGCTGTAGTTAAAGC 59084 33 100.0 35 ................................. AAAAAACGTGTCTTTCCCGATCGTATGAAATTCGG 59152 33 100.0 33 ................................. TCTGAGTTTTCCGCTGCCAGCCTCGATCAAAGG 59218 33 100.0 35 ................................. GCGGCGCTTAGACCAGTGCTTGCCGCTGTAAATAG 59286 33 100.0 34 ................................. GGACAGCGCTCGAATCCAGCAAGGAAAAGATTGA 59353 33 100.0 34 ................................. CTCTGTAATGTCTTGCAACCTCTCCACCCTCACA 59420 33 100.0 33 ................................. CTCGCAGGCTACTAATATTTTCATTGTCATAGT 59486 33 100.0 35 ................................. TGTCTTGTCTTTTATATGACCAGTTTCTGTGTGCC 59554 33 100.0 34 ................................. CGGCAGAAGCTGGACGAGTACAGAAACGTTAAGT 59621 33 100.0 34 ................................. GGTATTCTCTGGCTCAAAAGCTCCGCCTTTACCA 59688 33 100.0 33 ................................. TTATATTAAGCAATGGTATAACGAATCCATAAT 59754 33 100.0 34 ................................. ATCTTTATGATTTACGCAAGGAAGATTGAGCGGG 59821 33 100.0 35 ................................. CGTTTTTCCCGACATTCCGGGCAGTACCATGCTCG 59889 33 100.0 33 ................................. TATTACAAATGTAGGAACGACCAGTGCAGCAGT 59955 33 100.0 34 ................................. TCCTCAAGCCAGATATAACGCTCCCGTCCTTTAA 60022 33 100.0 34 ................................. CATCCTTTTTTGTGGGCTGGATCTAAGCAAGCCA 60089 33 100.0 35 ................................. AACGAAAAACTTACCGATATTAACGCGCATGGAAA 60157 33 100.0 33 ................................. AGTTCAGCAGCAGCAAGAGTACGAAGCCCACAC 60223 33 100.0 34 ................................. TGGCCTTATCACTCCCGCCCTAACCAACCTCTCC 60290 33 100.0 33 ................................. CTGCGGGTTAAAGTCATCCTCTGGAATCCAGTA 60356 33 100.0 33 ................................. CGATATATCTAACAGCACAGACCGCTAGAAACA 60422 33 100.0 34 ................................. ATCGGGGTTTCCCCAGAGGGCCTACGCGCTTACA 60489 33 100.0 34 ................................. TGGAGGCGCACTTGTAGGAGTATTAGCGGGAGTA 60556 33 100.0 36 ................................. ATTCGGACGTATCTTTATTTTTAGGATTTTTAGGAG 60625 33 100.0 34 ................................. CTTCAAGGTCGGGGATGCTTATGCTCTATCCACA 60692 33 100.0 35 ................................. GTTTGGGATAATGATCCCACTGCTGCAAACAAAGT 60760 33 100.0 33 ................................. TGATGCGGTCGATAAGTCGTTCGGTAAGGTTGA 60826 33 100.0 33 ................................. TTGGGATATAACGGAGAGCTGGAGGCCGTTTTT 60892 33 100.0 33 ................................. CTCGATGGCTTTGATATTACACCGGATGCTTTG 60958 33 100.0 34 ................................. TCTATGTTACCCGTGAGGATTATATCAGGGTAAT 61025 33 100.0 33 ................................. ACCCCCTGATTGTGATATAGTAGGGCCGTAAGG 61091 33 100.0 33 ................................. AGAGTGGTGCACTGGTGGAAGATGCCCAGATCG 61157 33 100.0 35 ................................. GTGGTATCTCAACCACTTCAAGCGCCCCGTGTGCC 61225 33 100.0 36 ................................. TTCAGGCTTATAGTAATATTTCTCGGTTGCTGCCAG 61294 33 90.9 36 ...........CA...........A........ AGCGTGCCATCGGAGTTGACGTTGCGGGTATTGTTG 61363 33 78.8 0 ....C.....G.AT.....G...A....A.... | ========== ====== ====== ====== ================================= ==================================== ================== 38 33 99.2 34 GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Left flank : TATCCGCGGCGATATCGATGAGTACCCACCGTTTGTCTGGAGGTAGACGATGCTTGTCCTGATTACCTACGATGTGAATACCGAGGATGCAAAAGGCAGCAAGCGGCTTCGCAAGGTTGCAAAGATTTGCGTGAATTACGGGCAGCGCGTGCAAAATTCTGTGTTCGAATGCCTTCTGTCCCCTGCGGAATTATGTATTGTGAAAAGCCAGTTGCTTACTGTTATGGACGAAAAGAAAGACAGCCTGCGTATTTATCATCTGGGAAACAATTATAAAAACCGTATTGAACATTACGGAGCGAAACAAACATACAACCCGGAAGATCTGATGACATTTTAACGCGAATCGCAAGCGTACATCAAATCCGCGGGGGATTCGCGCATGAAATTGGATCAATTTATAGTGAGAAGCTTTGCTAATCTGCGATTTATTTTCTTTTTGATGTGAATGATTACTAAGCTTTAATCAAGATCGTTCCGTTGAACTTGTTTGTTTTGCA # Right flank : TCTGACCAGTCTGACAAATGATACTTTTGATGTTTTCCCGCCCGCATATTAAGTTTTTACACTGTGCTTCCTCTGGCCGATTCAAGTAAATATTTTTAAAGTCGATGGAATGCCCCGGTTTACTCTGCGTTTACATTGTTGGTATACTATAAGCAATAGAAAGCCGGAGAGGAGGCGCATTCATGGCCGCCATTTTAGTCATTGATGATGATCCATATATACGGGAGCTCGTGAGCACCTTACTGCATAATGAGGGCTTCTCGGTACAGGAAGCCCGGAATGGGCGGGAAGCGCTGCAAAAGCTGAGTGAAACAAAAATCGACCTCTGTGTGCTGGATTTGATGATGCCCGAAATGGACGGTTTCGAGTTTTGCGGTTATGCGCGCCGGTACTATGAGGATTTGCCGATCCTGATGTTGACGGCGAAGGGCGAGATCAGCCAGAAGGTGAAAGGGTTCGAGCTTGGAACAGACGATTACCTGACAAAACCGTTTGAAGGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26579-28003 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKFU01000033.1 Clostridium sp. MSTE9 ctg120006483000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 26579 31 100.0 36 ............................... TGTGCTTTTTTTCGGACAGTAATAACGGACCTGCCG 26646 31 100.0 36 ............................... TGCAATGCTTAAACGTGCATACGGAGGCGGGTACGG 26713 31 100.0 35 ............................... TCGCGGCATTTATGGCCGATTATGGTATTGATCTG 26779 31 100.0 35 ............................... TTGTTGGTACTAAAGTGATTATTTTTGGGGGCAGG 26845 31 100.0 34 ............................... GTCGGGTACATGACCTGACCATATGGATATATCG 26910 31 100.0 36 ............................... TGAATCTGTGGGTGCTCCGTGGTTACGTTACTGCGG 26977 31 100.0 37 ............................... TCCCCAATGGTTTACTATCGCAACATTCTTGAGCCGG 27045 31 100.0 36 ............................... AGAAGAAACAAATTTTTCAGAGCCTGAATTGAAAGG 27112 31 100.0 35 ............................... TTTCAGCGTAGCCAGAAAGGCTGATTTCGCGGCCG 27178 31 100.0 36 ............................... TGTTTGCCAATCTGTGTTAGACGGAGCCGCTAAAGG 27245 31 100.0 35 ............................... TGCCGGATTTATCCGGCAGAAGGGGCCATTTAACG 27311 31 100.0 36 ............................... AAAAGCCGAACGGTATACGCCGGATCAGGTCGGAGG 27378 31 100.0 35 ............................... TGCCCTGCCATCATCAGACCGAGGGGGGCTGTTCG 27444 31 96.8 36 ............C.................. CTCCTCAGCCCGGTGCTCTTCCGGATCCAGAGCATG 27511 31 96.8 35 ............C.................. AAGCGATATTGCTGTCACCAGCTTTACCATTGCTG 27577 31 96.8 37 ............C.................. GCCAAGAGATTAGCGCGGATTGTGCAGAACGCGTATG 27645 30 90.3 37 .........G..-T................. GATCCGAAAAAGGATCACACCATTCACCCGGTTGGCG 27712 31 100.0 34 ............................... GACCCGAAGCGCGACCACACGATACACCCGGTCG 27777 31 96.8 33 ............C.................. TGGTTTGAGCGCTCTAAGGCTGATCATAAAGAG 27841 31 96.8 35 ............C.................. AGCAATCAAGAGCTTTTCCAAAGGGGCGGTTATTG 27907 31 96.8 33 ............C.................. AATGATGCGATCCCGGAGGAACACAAAAGCGGG A [27924] 27972 31 83.9 0 .....T...G.AC...A.............. | A [27988] ========== ====== ====== ====== =============================== ===================================== ================== 22 31 98.0 35 TCGCTCCCCATGTGGGGGCGTGGATTGAAAT # Left flank : CCGCTTTTAATGATACTTATCCCTTTTTCCTTTCATTTTATAAAAGCAGGGTACCGTTATGCGATACCCTGCTTTGCTTTGTGAAAGGTGATTGGAACATGTGGAGCAAATTTCTCCGGATCTCATAACAAAAAAATTTATATTCTGATTGAAAAGAATACAATACCTGTTGAGCTTTGTTGGTTTGCGGAGTAAAATAAAAATAATTAAAAATTCTGGAATCTGGTGGGGCAGTGGGCTTCGGATTCAATTTTGAAAAAGTTATCGGTCTAAAGTAGAACACATAGGTGCAAAACCCAGCTGTTCTGTGGAACGGTTTTGATTATGCAGTGCGAACCATCAGCGAACAGAAAATAGCAGGAGTATTCGCGCTGATTTTTGGTGATTTAATTATTTTTTAGAATAATCATTGCATGATTAGCAGATACGAAATTGATGTCTGAATAAAAGTTTGTGTAAAGACTCTTATTCTATCTGTTCGGCTTTGTCTATTTTTGCGG # Right flank : TTACATGCAGTCTTGGTTCGTGTAGTAGCAGAATTGCACCCTTCCATAAAATTTTTGGGCAATCGGCTGCGAAAATCCGGTATGGGATTCTCTGGCGGCTGATTGTCCCACCTTGTCCTTTCTACATATAATGAAGCACCTATCAAAAAGGAGGGTTTGATATGTGGGCTTGGTATCATTGTCATTGGTGGTTCTGCTATAACGGCCACTGTATCCCGTGGTATGATTAAGAAACGAGTGCAGCAATCGAGTCTGATTTAAAGATCGATTGTGTGCAGGACTGTATGAACACATGGATTTTCCATACACTATCCCCGAGGTGATTTTGTATGGATTATTCCGACTTTTCTTTTCCTCAGGCTTTGTCTGAAGATCGCAAGCTGAAAGAGTTTTTTGATTCTCTTCCGGAGCAGGATCAGCTGCGGCTGATGCAGGGCTGTAGCTCCTACGGCGAATTTTACGACAGGGTCGTACAGGCAATCCCAAAATGCTGAAAAAGG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGTGGGGGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //